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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:100.5 nTPM
HPA:100.5 nTPM
GTEx:121.4 nTPM
FANTOM5:121.0 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max nTPM 100.5
Sample id Sample description nTPM
Amygdala
nTPM: 97.8
2814 Male, age 76, right hemisphere 99.1
2695 Female, age 67, right hemisphere 98.2
2517 Female, age 94, left hemisphere 97.9
2514 Male, age 75, right hemisphere 97.8
1987 Female, age 91, left hemisphere 95.9
Basal amygdala
nTPM: 99.2
2243 Female, age 91, right hemisphere 102.1
1955 Male, age 76, both hemispheres 101.8
2685 Female, age 94, left hemisphere 99.3
2609 Male, age 75, right hemisphere 99.0
2110 Male, age 80, left hemisphere 97.4
2827 Female, age 67, right hemisphere 95.9
Central amygdala
nTPM: 98.6
2701 Female, age 91, right hemisphere 103.4
2239 Male, age 80, left hemisphere 101.1
1905 Male, age 76, both hemispheres 97.1
2826 Female, age 94, left hemisphere 95.8
2515 Male, age 75, right hemisphere 95.5
Corticomedial amygdala
nTPM: 100.5
2240 Male, age 76, both hemispheres 103.8
2242 Female, age 91, right hemisphere 103.8
2429 Female, age 94, left hemisphere 99.6
2428 Male, age 75, right hemisphere 98.7
2829 Male, age 80, left hemisphere 98.7
2535 Female, age 67, right hemisphere 98.2
Lateral amygdala
nTPM: 96.9
1883 Male, age 76, both hemispheres 99.1
2256 Male, age 80, left hemisphere 98.1
2255 Female, age 91, right hemisphere 97.4
2516 Male, age 75, right hemisphere 96.9
2534 Female, age 94, left hemisphere 96.3
2830 Female, age 67, right hemisphere 93.4
Stria terminalis, bed nucleus
nTPM: 97.3
2201 Male, age 74, unknown 100.2
2486 Female, age 94, both hemispheres 97.6
1974 Female, age 91, both hemispheres 94.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 121.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 121.4
Samples: 152

Max nTPM: 288.4
Min nTPM: 42.4
Std nTPM: 38.7
Median nTPM: 119.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 288.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 251.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 250.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 240.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 208.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 192.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 188.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 184.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 181.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 180.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 180.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 175.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 171.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 170.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 168.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 165.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 164.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 163.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 162.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 158.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 155.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 155.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 154.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 152.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 152.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 151.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 150.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 148.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 147.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 147.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 145.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 145.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 144.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 143.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 141.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 141.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 140.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 140.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 139.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 136.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 136.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 135.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 135.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 134.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 132.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 131.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 131.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 131.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 130.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 130.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 129.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 129.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 129.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 128.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 128.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 128.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 128.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 127.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 126.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 126.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 126.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 125.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 125.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 125.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 125.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 123.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 123.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 123.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 122.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 121.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 121.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 121.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 120.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 120.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 120.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 119.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 119.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 119.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 117.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 117.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 117.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 116.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 115.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 114.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 114.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 113.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 113.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 112.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 112.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 111.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 111.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 111.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 110.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 109.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 108.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 107.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 106.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 106.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 105.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 105.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 105.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 105.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 104.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 103.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 103.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 102.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 102.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 101.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 99.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 98.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 97.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 97.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 97.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 96.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 95.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 95.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 92.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 92.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 92.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 92.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 91.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 90.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 90.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 89.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 88.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 87.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 87.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 87.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 87.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 86.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 86.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 86.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 84.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 83.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 83.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 83.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 81.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 77.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 76.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 74.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 72.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 70.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 69.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 68.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 61.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 59.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 59.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 55.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 55.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 49.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 47.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 42.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 121.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 121.0
FF:10151-102I7 76 years, female 121.0

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