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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA042721
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM: 4064.8
Min nTPM: 740.3
Std nTPM: 629.0
Median nTPM:
414_1
84 years, female
4064.8
126_1
63 years, male
3600.4
490_1
67 years, female
3600.0
468_1
89 years, male
3243.6
162_1
79 years, female
3207.2
415_1
77 years, female
3127.9
246_1
77 years, male
2865.4
466_1
57 years, female
2780.3
149_1
88 years, male
2768.3
32_1
67 years, male
2757.5
413_1
59 years, female
2672.0
115_1
83 years, male
2635.8
9_1
66 years, female
2568.1
6_1
73 years, female
2552.1
526_1
61 years, male
2549.4
265_1
87 years, male
2541.0
142_1
61 years, female
2525.9
153_1
70 years, female
2495.2
217_1
76 years, male
2493.7
394_1
75 years, female
2489.0
81_1
67 years, male
2412.2
189_1
76 years, male
2382.8
499_1
55 years, female
2372.8
352_1
62 years, male
2332.5
377_1
82 years, female
2331.7
89_1
63 years, male
2326.6
389_1
86 years, female
2322.4
503_1
68 years, male
2307.6
117_1
61 years, male
2293.0
425_1
59 years, female
2291.6
99_1
64 years, male
2291.4
315_1
62 years, female
2219.9
266_1
85 years, male
2175.5
137_1
83 years, male
2117.9
254_1
77 years, female
2069.1
518_1
75 years, female
2007.5
375_1
74 years, female
1989.1
313_1
79 years, female
1988.1
18_1
88 years, male
1977.8
172_1
72 years, female
1975.8
243_1
75 years, male
1963.9
319_1
81 years, male
1932.2
396_1
62 years, male
1928.6
347_1
72 years, male
1919.6
376_1
75 years, female
1919.1
251_1
78 years, male
1897.1
43_1
64 years, female
1895.4
404_1
82 years, female
1876.6
229_1
69 years, female
1873.8
406_1
79 years, male
1873.5
491_1
89 years, female
1870.4
177_1
74 years, male
1870.0
386_1
76 years, male
1862.5
355_1
70 years, female
1837.4
335_1
73 years, female
1776.3
120_1
70 years, female
1770.5
42_1
85 years, male
1752.1
288_1
66 years, female
1727.2
17_1
71 years, male
1713.2
119_1
70 years, female
1706.1
291_1
76 years, male
1693.1
321_1
62 years, female
1664.3
356_1
87 years, female
1660.9
354_1
81 years, female
1654.5
379_1
60 years, male
1646.2
517_1
88 years, male
1643.5
384_1
83 years, male
1632.2
447_1
81 years, male
1624.0
163_1
78 years, male
1622.1
35_1
74 years, female
1619.7
324_1
76 years, male
1605.6
109_1
81 years, female
1598.1
351_1
91 years, male
1563.8
237_1
82 years, male
1550.2
145_1
84 years, male
1531.3
349_1
83 years, male
1476.0
292_1
71 years, male
1465.0
405_1
91 years, male
1459.9
307_1
66 years, female
1447.2
350_1
84 years, female
1406.5
286_1
68 years, female
1398.4
501_1
88 years, male
1387.5
2_1
77 years, female
1385.1
495_1
57 years, female
1379.8
139_1
64 years, female
1336.0
318_1
68 years, male
1334.8
173_1
67 years, male
1298.5
480_1
63 years, male
1285.2
316_1
62 years, male
1268.6
4_1
88 years, female
1250.2
311_1
78 years, male
1237.5
348_1
84 years, male
1234.5
295_1
61 years, female
1223.0
264_1
73 years, female
1207.7
314_1
67 years, male
1190.5
293_1
68 years, female
1177.3
353_1
82 years, female
1174.9
320_1
89 years, female
1166.6
452_1
88 years, female
1132.4
317_1
60 years, male
1128.8
218_1
71 years, female
920.1
41_1
94 years, female
912.9
506_1
65 years, male
880.0
308_1
70 years, female
820.0
322_1
76 years, male
740.3
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.