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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:23.2 nTPM
HPA:23.2 nTPM
GTEx:66.0 nTPM
FANTOM5:9.1 Scaled Tags Per Million
Pig:32.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 23.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 18.5
2194 Female, age 79, both hemispheres 24.3
2816 Male, age 47, midline 23.6
1981 Female, age 72, midline 19.6
2048 Male, age 55, midline 14.1
2565 Male, age 75, midline 10.9
Cervical spinal cord, dorsal horn
nTPM: 20.3
2296 Male, age 66, both hemispheres 37.4
2173 Female, age 72, unknown 29.7
2069 Male, age 47, both hemispheres 16.7
1877 Male, age 55, unknown 16.5
2721 Male, age 90, both hemispheres 11.9
2297 Male, age 75, both hemispheres 9.8
Cervical spinal cord, ventral horn
nTPM: 23.2
2068 Male, age 55, unknown 30.5
2820 Female, age 79, both hemispheres 29.8
2480 Male, age 75, both hemispheres 20.8
2098 Female, age 72, unknown 20.5
2295 Male, age 66, both hemispheres 20.2
2809 Male, age 90, both hemispheres 17.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 66.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 66.0
Samples: 159

Max nTPM: 151.8
Min nTPM: 10.8
Std nTPM: 29.9
Median nTPM: 59.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 151.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 146.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 142.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 135.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 129.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 128.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 123.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 122.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 121.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 121.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 119.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 115.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 115.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 114.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 112.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 110.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 109.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 108.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 107.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 107.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 105.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 100.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 99.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 97.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 97.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 96.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 95.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 95.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 94.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 93.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 92.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 91.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 91.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 90.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 90.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 89.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 86.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 85.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 85.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 85.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 85.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 84.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 84.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 83.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 83.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 81.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 80.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 79.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 77.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 77.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 76.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 75.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 72.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 72.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 72.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 71.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 71.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 71.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 70.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 70.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 70.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 69.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 69.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 69.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 69.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 69.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 68.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 68.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 67.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 66.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 65.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 65.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 65.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 65.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 64.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 63.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 62.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 61.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 60.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 59.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 59.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 59.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 58.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 58.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 58.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 58.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 57.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 57.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 57.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 57.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 56.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 55.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 54.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 54.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 54.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 53.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 53.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 53.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 51.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 51.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 51.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 51.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 50.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 50.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 49.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 49.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 49.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 48.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 47.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 47.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 47.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 46.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 46.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 46.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 45.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 45.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 45.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 43.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 43.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 42.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 42.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 42.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 42.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 42.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 41.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 41.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 41.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 41.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 41.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 41.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 40.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 39.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 38.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 38.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 38.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 37.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 37.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 37.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 35.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 35.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 34.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 31.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 30.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 29.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 28.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 27.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 26.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 25.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 24.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 23.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 23.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 23.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 23.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 18.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 18.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 17.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 17.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 16.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 10.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 9.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 9.1
FF:10181-103D1 60 years, female 9.8
FF:10159-103A6 76 years, female 8.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 32.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 27.2
Samples: 4

Max nTPM: 31.5
Min nTPM: 24.0
Sample A Female 24.0
Sample B Female 27.7
Sample C Male 25.5
Sample D Male 31.5
Ventral spinal cord
nTPM: 32.8
Samples: 4

Max nTPM: 41.1
Min nTPM: 26.8
Sample A Female 35.0
Sample B Female 26.8
Sample C Male 28.2
Sample D Male 41.1

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