BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:3.0 nTPM
HPA:3.0 nTPM
GTEx:2.1 nTPM
FANTOM5:4.6 Scaled Tags Per Million
Pig:2.3 nTPM
Mouse:1.0 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA003043
Glial cells Medium
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 3.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 2.6
2288 Male, age 75, left hemisphere 2.7
2289 Male, age 61, right hemisphere 2.7
2846 Female, age 79, unknown 2.7
1781 Male, age 74, unknown 2.6
2290 Female, age 72, unknown 2.6
1854 Male, age 80, left hemisphere 2.5
1857 Female, age 85, left hemisphere 2.4
2481 Female, age 94, left hemisphere 2.4
Claustrum
nTPM: 2.9
1956 Male, age 74, unknown 3.5
2568 Male, age 61, both hemispheres 3.2
2284 Female, age 91, both hemispheres 3.0
2645 Female, age 72, unknown 3.0
2196 Female, age 79, unknown 2.9
2491 Male, age 75, both hemispheres 2.8
2198 Male, age 80, both hemispheres 2.7
2292 Female, age 85, both hemispheres 2.7
2392 Female, age 94, both hemispheres 2.6
Globus pallidus, externus
nTPM: 2.9
2646 Male, age 61, right hemisphere 3.6
2567 Female, age 72, unknown 3.3
2395 Male, age 75, both hemispheres 2.6
2772 Female, age 79, unknown 2.6
1996 Male, age 80, right hemisphere 2.5
Globus pallidus, internus
nTPM: 2.7
2566 Female, age 72, unknown 3.1
2778 Female, age 91, both hemispheres 2.9
1818 Male, age 74, unknown 2.8
2111 Female, age 85, right hemisphere 2.6
2287 Male, age 75, right hemisphere 2.6
2037 Male, age 80, right hemisphere 2.5
2483 Female, age 94, right hemisphere 2.3
Nucleus accumbens
nTPM: 2.6
1856 Female, age 91, right hemisphere 2.8
2824 Male, age 61, right hemisphere 2.8
1783 Male, age 74, unknown 2.7
2732 Male, age 80, right hemisphere 2.7
1806 Female, age 85, left hemisphere 2.6
2391 Female, age 94, left hemisphere 2.6
2286 Male, age 75, left hemisphere 2.5
2698 Female, age 72, unknown 2.3
Nucleus basalis of Meynert
nTPM: 2.7
2569 Male, age 61, both hemispheres 3.2
2821 Male, age 75, both hemispheres 2.9
2393 Male, age 80, right hemisphere 2.5
2484 Female, age 94, left hemisphere 2.5
Nucleus of the diagonal band
nTPM: 2.9
2029 Male, age 61, right hemisphere 3.2
2775 Male, age 80, right hemisphere 3.1
2195 Female, age 85, both hemispheres 2.9
1812 Female, age 91, both hemispheres 2.6
1979 Male, age 74, unknown 2.5
Olfactory tubercle
nTPM: 2.8
1998 Female, age 91, both hemispheres 3.0
2856 Male, age 75, right hemisphere 2.9
1846 Male, age 80, right hemisphere 2.8
2487 Female, age 94, left hemisphere 2.7
Putamen
nTPM: 2.6
2647 Male, age 75, left hemisphere 3.1
2489 Female, age 72, unknown 2.8
1937 Female, age 91, right hemisphere 2.7
2466 Female, age 79, unknown 2.6
1829 Male, age 74, unknown 2.5
1838 Male, age 80, right hemisphere 2.5
2482 Female, age 94, left hemisphere 2.3
Septal nuclei
nTPM: 3.0
1960 Male, age 74, unknown 3.8
2059 Female, age 85, both hemispheres 3.1
2031 Female, age 72, unknown 3.0
2394 Male, age 61, left hemisphere 2.9
2629 Female, age 94, right hemisphere 2.9
2199 Male, age 80, right hemisphere 2.8
2009 Female, age 91, both hemispheres 2.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 2.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1.9
Samples: 246

Max nTPM: 7.1
Min nTPM: 0.3
Std nTPM: 0.8
Median nTPM: 1.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 7.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 6.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 6.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 4.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 4.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 3.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 3.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 3.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 3.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 3.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 3.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 2.1
Samples: 246

Max nTPM: 9.2
Min nTPM: 0.6
Std nTPM: 0.9
Median nTPM: 1.9
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 9.2
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 5.8
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 5.2
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 5.1
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 4.5
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 4.3
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 3.8
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 3.8
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 3.8
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 3.7
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 3.7
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Brain - Putamen (basal ganglia)
Average nTPM: 1.9
Samples: 205

Max nTPM: 5.3
Min nTPM: 0.4
Std nTPM: 0.7
Median nTPM: 1.8
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 5.3
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 4.2
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 3.7
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 3.4
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 3.4
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 3.4
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 3.3
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 3.3
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 3.3
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 3.2
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 3.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 4.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.4
FF:10164-103B2 76 years, female 0.4
Globus pallidus
Scaled Tags Per Million: 0.0
FF:10161-103A8 76 years, female 0.1
FF:10175-103C4 60 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 4.6
FF:10037-101F1 23-56 years, mixed 4.6
Putamen
Scaled Tags Per Million: 0.2
FF:10176-103C5 60 years, female 0.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 2.3
Pig sample Sample description nTPM
Caudate
nTPM: 2.3
Samples: 4

Max nTPM: 3.1
Min nTPM: 1.5
Sample A Female 1.6
Sample B Female 2.8
Sample C Male 3.1
Sample D Male 1.5
Putamen
nTPM: 2.1
Samples: 4

Max nTPM: 2.8
Min nTPM: 1.0
Sample A Female 1.0
Sample B Female 2.2
Sample C Male 2.8
Sample D Male 2.2
Septum
nTPM: 1.5
Samples: 4

Max nTPM: 2.0
Min nTPM: 0.9
Sample A Female 1.7
Sample B Female 2.0
Sample C Male 0.9
Sample D Male 1.5
Ventral pallidum
nTPM: 1.9
Samples: 4

Max nTPM: 2.6
Min nTPM: 1.2
Sample A Female 1.2
Sample B Female 2.6
Sample C Male 2.1
Sample D Male 1.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 1.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.4
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.2
Sample A Male 0.3
Sample B Male 0.5
Sample C Female 0.4
Sample D Female 0.2
Septum
nTPM: 0.3
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.2
Sample A Male 0.3
Sample B Male 0.3
Sample C Female 0.2
Sample D Female 0.3
Ventral forebrain
nTPM: 1.0
Samples: 4

Max nTPM: 1.6
Min nTPM: 0.6
Sample A Male 1.6
Sample B Male 0.8
Sample C Female 0.6
Sample D Female 1.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
74431104 Antisense, RP_060207_01_F01, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
74431104 Antisense, RP_060207_01_F01, Mouse strain C57BL/6J (56 days, male) 0.0

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