MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:41.6 nTPM
HPA:41.6 nTPM
GTEx:31.6 nTPM
FANTOM5:21.2 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 41.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.7
2019 Male, age 18, unknown 47.9
2586 Male, age 75, left hemisphere 39.9
2666 Male, age 74, left hemisphere 35.5
1830 Male, age 51, unknown 33.7
1833 Male, age 53, unknown 33.3
1827 Male, age 72, unknown 32.6
2828 Female, age 72, unknown 32.2
2411 Female, age 72, unknown 32.1
1870 Female, age 42, unknown 31.0
2219 Male, age 76, both hemispheres 28.8
Dorsal raphe nucleus
nTPM: 37.2
2047 Male, age 72, unknown 42.1
1828 Male, age 53, unknown 40.6
2298 Female, age 72, unknown 36.6
2750 Male, age 76, both hemispheres 35.8
2016 Female, age 72, unknown 30.9
Inferior colliculus
nTPM: 30.0
1848 Female, age 42, unknown 32.1
2849 Male, age 72, unknown 30.7
1890 Male, age 53, unknown 28.7
2097 Female, age 72, unknown 28.7
Median raphe nucleus
nTPM: 38.8
2220 Male, age 76, midline 38.8
Pedunculopontine tegmental nucleus
nTPM: 37.3
2338 Male, age 61, both hemispheres 41.7
2334 Male, age 80, both hemispheres 37.3
1921 Female, age 85, both hemispheres 32.8
Periaquaductal grey, anterior
nTPM: 29.4
2502 Female, age 75, unknown 31.6
1795 Male, age 51, unknown 30.7
1947 Male, age 18, unknown 25.9
Periaquaductal grey, dorsal
nTPM: 32.6
2850 Male, age 76, both hemispheres 37.8
1840 Male, age 53, unknown 32.1
2464 Female, age 72, unknown 31.2
1831 Male, age 72, unknown 29.2
Periaquaductal grey, lateral
nTPM: 33.6
2140 Male, age 76, both hemispheres 36.5
2053 Male, age 18, unknown 32.7
2272 Male, age 74, both hemispheres 31.6
Pretectal area
nTPM: 35.3
1944 Female, age 72, unknown 42.0
2007 Male, age 72, unknown 41.4
1817 Female, age 42, unknown 37.5
2407 Male, age 75, both hemispheres 36.2
2316 Male, age 76, right hemisphere 34.2
1815 Male, age 53, unknown 34.1
1816 Male, age 51, unknown 33.7
2667 Female, age 75, unknown 33.4
2224 Female, age 72, unknown 32.6
2273 Male, age 74, both hemispheres 32.5
2825 Male, age 18, unknown 31.1
Red nucleus
nTPM: 34.2
2785 Male, age 18, unknown 43.3
1821 Female, age 72, unknown 37.6
2725 Female, age 75, unknown 36.7
2584 Male, age 75, left hemisphere 36.1
2823 Male, age 76, right hemisphere 35.4
2769 Male, age 72, unknown 33.3
1865 Male, age 51, unknown 33.1
2227 Male, age 72, unknown 32.7
2588 Male, age 74, left hemisphere 32.6
2503 Female, age 72, unknown 31.5
1954 Female, age 42, unknown 30.4
1904 Male, age 53, unknown 28.3
Substantia nigra
nTPM: 41.6
1941 Male, age 53, unknown 55.6
1916 Female, age 42, unknown 51.5
2241 Male, age 72, unknown 43.0
1851 Male, age 51, unknown 42.8
1889 Female, age 72, unknown 40.5
2699 Male, age 18, unknown 40.5
2409 Female, age 72, unknown 37.5
2665 Male, age 74, both hemispheres 37.4
2583 Male, age 75, right hemisphere 34.1
2590 Female, age 75, unknown 33.6
Superior colliculus
nTPM: 32.4
2087 Female, age 72, unknown 38.4
2668 Female, age 75, unknown 34.2
1839 Male, age 51, unknown 34.1
1895 Male, age 76, right hemisphere 34.0
2587 Male, age 74, left hemisphere 33.8
2664 Male, age 75, both hemispheres 33.0
1796 Male, age 53, unknown 32.8
1913 Female, age 42, unknown 28.5
1995 Male, age 72, unknown 28.5
2261 Male, age 18, unknown 26.3
Ventral tegmental area
nTPM: 36.8
1915 Female, age 42, unknown 44.0
2218 Male, age 76, both hemispheres 39.6
2410 Female, age 72, unknown 36.9
2021 Male, age 53, unknown 34.3
1942 Male, age 51, unknown 33.3
2223 Female, age 72, unknown 32.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.6
Samples: 139

Max nTPM: 104.5
Min nTPM: 14.2
Std nTPM: 15.2
Median nTPM: 28.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 104.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 88.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 79.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 77.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 69.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 69.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 62.5
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 58.6
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 56.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 55.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 54.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.2
FF:10158-103A5 76 years, female 21.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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