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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:83.0 nTPM
GTEx:87.1 nTPM
FANTOM5:179.3 Scaled Tags Per Million
Pig:39.0 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 83.0
Sample id Sample description nTPM
Putamen
nTPM: 83.0
2466 Female, age 79, unknown 87.9
2482 Female, age 94, left hemisphere 87.6
1838 Male, age 80, right hemisphere 85.3
1937 Female, age 91, right hemisphere 84.3
1829 Male, age 74, unknown 81.8
2489 Female, age 72, unknown 77.3
2647 Male, age 75, left hemisphere 77.1

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 87.1
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 87.1
Samples: 205

Max nTPM: 132.9
Min nTPM: 53.1
Std nTPM: 14.8
Median nTPM: 86.2
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 132.9
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 129.7
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 126.4
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 121.5
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 120.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 119.8
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 117.4
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 116.5
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 115.0
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 114.8
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 114.6
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 113.7
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 113.3
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 112.1
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 110.8
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 110.4
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 110.3
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 110.2
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 108.9
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 108.1
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 107.3
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 106.7
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 105.3
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 105.0
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 104.8
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 104.7
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 104.1
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 103.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 103.6
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 102.2
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 102.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 101.4
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 101.0
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 100.1
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 99.7
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 99.6
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 99.2
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 99.0
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 98.9
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 98.5
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 98.4
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 98.0
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 98.0
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 97.9
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 97.1
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 96.9
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 96.8
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 96.4
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 96.0
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 96.0
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 95.9
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 95.8
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 95.3
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 94.7
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 94.7
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 94.5
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 94.2
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 94.1
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 94.0
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 93.9
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 93.9
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 93.2
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 93.1
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 93.0
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 92.7
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 92.6
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 92.2
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 92.2
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 92.1
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 91.8
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 91.7
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 91.5
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 91.4
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 91.3
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 91.0
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 90.8
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 90.7
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 90.5
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 90.4
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 90.3
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 90.3
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 90.3
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 90.3
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 90.1
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 90.0
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 89.8
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 89.8
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 89.7
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 89.6
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 89.5
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 89.5
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 89.2
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 89.0
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 87.9
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 87.6
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 87.6
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 87.6
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 87.4
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 87.3
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 87.3
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 86.6
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 86.3
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 86.2
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 85.9
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 85.8
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 85.7
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 85.5
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 85.5
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 85.3
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 85.3
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 85.3
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 85.2
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 85.1
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 84.7
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 84.6
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 84.6
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 84.6
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 84.6
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 84.5
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 84.4
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 84.1
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 84.0
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 83.9
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 83.8
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 83.8
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 83.1
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 82.5
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 82.4
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 82.0
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 81.9
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 81.8
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 81.7
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 81.5
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 81.4
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 81.1
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 80.1
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 79.9
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 79.9
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 79.9
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 79.4
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 79.1
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 79.0
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 78.9
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 78.7
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 78.7
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 78.2
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 78.1
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 77.8
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 77.6
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 77.3
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 77.3
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 77.2
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 77.0
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 76.8
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 76.8
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 76.7
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 76.5
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 76.0
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 75.7
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 75.4
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 75.3
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 74.5
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 74.5
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 74.3
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 74.3
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 73.7
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 73.7
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 73.3
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 73.1
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 72.5
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 72.2
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 70.8
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 70.7
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 70.4
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 69.8
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 69.7
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 69.4
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 69.3
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 69.0
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 68.9
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 68.7
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 68.5
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 68.3
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 68.2
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 68.2
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 68.1
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 67.8
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 67.7
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 67.4
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 67.0
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 66.9
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 66.4
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 66.0
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 65.9
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 65.8
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 64.9
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 63.3
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 63.1
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 62.9
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 62.4
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 61.3
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 58.5
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 57.9
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 57.4
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 53.1
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 179.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 179.3
FF:10176-103C5 60 years, female 179.3

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 39.0
Pig sample Sample description nTPM
Putamen
nTPM: 39.1
Samples: 4

Max nTPM: 50.2
Min nTPM: 31.0
Sample A Female 37.3
Sample B Female 31.0
Sample C Male 50.2
Sample D Male 37.7

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