BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:21.9 nTPM
HPA:21.9 nTPM
GTEx:31.0 nTPM
FANTOM5:39.4 Scaled Tags Per Million
Pig:3.9 nTPM
Mouse:62.4 nTPM
Allen mouse:19.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA015970
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 21.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 19.9
2290 Female, age 72, unknown 23.6
1857 Female, age 85, left hemisphere 21.0
1781 Male, age 74, unknown 20.7
2289 Male, age 61, right hemisphere 20.7
2846 Female, age 79, unknown 20.7
1854 Male, age 80, left hemisphere 20.4
2288 Male, age 75, left hemisphere 20.1
2481 Female, age 94, left hemisphere 12.2
Claustrum
nTPM: 21.9
2645 Female, age 72, unknown 26.3
2568 Male, age 61, both hemispheres 25.2
2491 Male, age 75, both hemispheres 24.7
2284 Female, age 91, both hemispheres 24.3
2198 Male, age 80, both hemispheres 22.7
1956 Male, age 74, unknown 19.3
2392 Female, age 94, both hemispheres 18.8
2196 Female, age 79, unknown 18.3
2292 Female, age 85, both hemispheres 17.2
Globus pallidus, externus
nTPM: 11.4
2646 Male, age 61, right hemisphere 13.8
2567 Female, age 72, unknown 12.2
2395 Male, age 75, both hemispheres 11.9
2772 Female, age 79, unknown 10.4
1996 Male, age 80, right hemisphere 8.7
Globus pallidus, internus
nTPM: 9.8
2483 Female, age 94, right hemisphere 11.0
2287 Male, age 75, right hemisphere 10.8
2566 Female, age 72, unknown 10.2
1818 Male, age 74, unknown 9.4
2778 Female, age 91, both hemispheres 9.3
2037 Male, age 80, right hemisphere 9.2
2111 Female, age 85, right hemisphere 8.5
Nucleus accumbens
nTPM: 19.4
1856 Female, age 91, right hemisphere 23.6
1783 Male, age 74, unknown 23.4
2824 Male, age 61, right hemisphere 22.5
1806 Female, age 85, left hemisphere 20.3
2286 Male, age 75, left hemisphere 19.9
2698 Female, age 72, unknown 17.6
2732 Male, age 80, right hemisphere 14.6
2391 Female, age 94, left hemisphere 13.5
Nucleus basalis of Meynert
nTPM: 17.0
2393 Male, age 80, right hemisphere 18.7
2484 Female, age 94, left hemisphere 18.5
2821 Male, age 75, both hemispheres 17.7
2569 Male, age 61, both hemispheres 13.0
Nucleus of the diagonal band
nTPM: 19.3
2029 Male, age 61, right hemisphere 20.8
2775 Male, age 80, right hemisphere 20.7
2195 Female, age 85, both hemispheres 19.2
1979 Male, age 74, unknown 17.9
1812 Female, age 91, both hemispheres 17.8
Olfactory tubercle
nTPM: 20.7
1998 Female, age 91, both hemispheres 23.4
2487 Female, age 94, left hemisphere 21.3
2856 Male, age 75, right hemisphere 19.2
1846 Male, age 80, right hemisphere 18.8
Putamen
nTPM: 19.3
2466 Female, age 79, unknown 22.4
1838 Male, age 80, right hemisphere 22.3
1829 Male, age 74, unknown 20.3
1937 Female, age 91, right hemisphere 19.4
2489 Female, age 72, unknown 18.6
2647 Male, age 75, left hemisphere 18.2
2482 Female, age 94, left hemisphere 13.8
Septal nuclei
nTPM: 18.4
1960 Male, age 74, unknown 21.7
2059 Female, age 85, both hemispheres 20.5
2031 Female, age 72, unknown 19.4
2009 Female, age 91, both hemispheres 18.8
2629 Female, age 94, right hemisphere 18.5
2394 Male, age 61, left hemisphere 15.2
2199 Male, age 80, right hemisphere 14.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 31.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 27.4
Samples: 246

Max nTPM: 62.7
Min nTPM: 3.7
Std nTPM: 12.1
Median nTPM: 27.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 62.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 56.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 55.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 53.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 53.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 52.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 52.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 49.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 48.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 48.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 48.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 31.0
Samples: 246

Max nTPM: 67.8
Min nTPM: 3.8
Std nTPM: 13.1
Median nTPM: 31.1
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 67.8
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 63.3
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 59.6
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 59.4
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 57.9
GTEX-1HBPI-0011-R6b-SM-A9G1T 50-59 years, male 57.8
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 57.2
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 56.8
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 56.7
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 55.6
GTEX-1F6I4-0011-R6a-SM-CE6R4 60-69 years, male 55.3
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Brain - Putamen (basal ganglia)
Average nTPM: 25.5
Samples: 205

Max nTPM: 55.6
Min nTPM: 4.7
Std nTPM: 11.4
Median nTPM: 25.1
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 55.6
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 53.9
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 51.9
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 49.8
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 48.9
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 46.6
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 46.3
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 45.6
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 45.0
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 44.7
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 43.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 39.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 28.9
FF:10164-103B2 76 years, female 28.9
Globus pallidus
Scaled Tags Per Million: 14.9
FF:10175-103C4 60 years, female 23.6
FF:10161-103A8 76 years, female 6.1
Nucleus accumbens
Scaled Tags Per Million: 22.1
FF:10037-101F1 23-56 years, mixed 22.1
Putamen
Scaled Tags Per Million: 39.4
FF:10176-103C5 60 years, female 39.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 3.9
Pig sample Sample description nTPM
Caudate
nTPM: 4.0
Samples: 4

Max nTPM: 4.4
Min nTPM: 3.4
Sample A Female 3.4
Sample B Female 4.4
Sample C Male 4.4
Sample D Male 3.7
Putamen
nTPM: 3.1
Samples: 4

Max nTPM: 3.7
Min nTPM: 1.8
Sample A Female 1.8
Sample B Female 3.2
Sample C Male 3.6
Sample D Male 3.7
Septum
nTPM: 3.8
Samples: 4

Max nTPM: 4.7
Min nTPM: 2.6
Sample A Female 4.1
Sample B Female 3.8
Sample C Male 4.7
Sample D Male 2.6
Ventral pallidum
nTPM: 3.5
Samples: 4

Max nTPM: 4.0
Min nTPM: 2.7
Sample A Female 3.9
Sample B Female 3.4
Sample C Male 4.0
Sample D Male 2.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 62.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 62.5
Samples: 4

Max nTPM: 70.6
Min nTPM: 54.4
Sample A Male 70.6
Sample B Male 66.7
Sample C Female 58.1
Sample D Female 54.4
Septum
nTPM: 31.0
Samples: 4

Max nTPM: 42.7
Min nTPM: 24.3
Sample A Male 42.7
Sample B Male 26.4
Sample C Female 30.6
Sample D Female 24.3
Ventral forebrain
nTPM: 51.2
Samples: 4

Max nTPM: 60.3
Min nTPM: 42.0
Sample A Male 60.3
Sample B Male 48.5
Sample C Female 42.0
Sample D Female 54.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 19.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 19.2
393241 Antisense, RP_040804_02_G10, Mouse strain C57BL/6J (56 days, male) 19.2
Pallidum
Expression energy: 11.7
393241 Antisense, RP_040804_02_G10, Mouse strain C57BL/6J (56 days, male) 11.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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