MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:21.3 nTPM
HPA:21.3 nTPM
GTEx:18.1 nTPM
FANTOM5:70.4 Scaled Tags Per Million
Pig:36.2 nTPM
Mouse:51.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 21.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.8
1870 Female, age 42, unknown 17.7
1827 Male, age 72, unknown 17.1
2411 Female, age 72, unknown 17.1
2019 Male, age 18, unknown 16.4
1833 Male, age 53, unknown 15.8
2219 Male, age 76, both hemispheres 15.4
1830 Male, age 51, unknown 15.2
2586 Male, age 75, left hemisphere 15.0
2828 Female, age 72, unknown 14.3
2666 Male, age 74, left hemisphere 14.1
Dorsal raphe nucleus
nTPM: 17.9
2298 Female, age 72, unknown 21.1
1828 Male, age 53, unknown 17.8
2047 Male, age 72, unknown 17.2
2750 Male, age 76, both hemispheres 17.1
2016 Female, age 72, unknown 16.2
Inferior colliculus
nTPM: 17.2
2097 Female, age 72, unknown 21.0
1848 Female, age 42, unknown 16.4
1890 Male, age 53, unknown 16.4
2849 Male, age 72, unknown 15.1
Median raphe nucleus
nTPM: 21.3
2220 Male, age 76, midline 21.3
Pedunculopontine tegmental nucleus
nTPM: 17.5
2334 Male, age 80, both hemispheres 19.4
1921 Female, age 85, both hemispheres 17.7
2338 Male, age 61, both hemispheres 15.6
Periaquaductal grey, anterior
nTPM: 18.4
2502 Female, age 75, unknown 19.2
1947 Male, age 18, unknown 19.1
1795 Male, age 51, unknown 16.9
Periaquaductal grey, dorsal
nTPM: 18.0
2850 Male, age 76, both hemispheres 20.1
1831 Male, age 72, unknown 17.4
1840 Male, age 53, unknown 17.4
2464 Female, age 72, unknown 17.1
Periaquaductal grey, lateral
nTPM: 16.9
2140 Male, age 76, both hemispheres 18.7
2053 Male, age 18, unknown 16.1
2272 Male, age 74, both hemispheres 15.8
Pretectal area
nTPM: 17.6
1816 Male, age 51, unknown 19.2
2224 Female, age 72, unknown 19.1
1944 Female, age 72, unknown 18.6
2007 Male, age 72, unknown 18.4
2273 Male, age 74, both hemispheres 18.2
1817 Female, age 42, unknown 17.9
1815 Male, age 53, unknown 17.7
2667 Female, age 75, unknown 17.2
2825 Male, age 18, unknown 16.5
2316 Male, age 76, right hemisphere 16.3
2407 Male, age 75, both hemispheres 14.8
Red nucleus
nTPM: 15.7
1821 Female, age 72, unknown 17.8
2725 Female, age 75, unknown 17.3
1954 Female, age 42, unknown 16.6
2785 Male, age 18, unknown 16.0
1904 Male, age 53, unknown 15.8
2503 Female, age 72, unknown 15.8
2227 Male, age 72, unknown 15.5
1865 Male, age 51, unknown 15.3
2769 Male, age 72, unknown 15.2
2584 Male, age 75, left hemisphere 14.7
2823 Male, age 76, right hemisphere 14.7
2588 Male, age 74, left hemisphere 14.1
Substantia nigra
nTPM: 17.8
2241 Male, age 72, unknown 22.1
1916 Female, age 42, unknown 19.8
1941 Male, age 53, unknown 18.9
1889 Female, age 72, unknown 18.8
1851 Male, age 51, unknown 18.4
2409 Female, age 72, unknown 17.8
2699 Male, age 18, unknown 16.1
2583 Male, age 75, right hemisphere 15.6
2590 Female, age 75, unknown 15.3
2665 Male, age 74, both hemispheres 15.2
Superior colliculus
nTPM: 16.0
2087 Female, age 72, unknown 17.7
2261 Male, age 18, unknown 17.4
2587 Male, age 74, left hemisphere 16.3
2668 Female, age 75, unknown 16.3
1796 Male, age 53, unknown 16.2
1839 Male, age 51, unknown 16.1
1895 Male, age 76, right hemisphere 15.9
1913 Female, age 42, unknown 15.7
1995 Male, age 72, unknown 14.5
2664 Male, age 75, both hemispheres 14.0
Ventral tegmental area
nTPM: 17.4
2410 Female, age 72, unknown 18.4
1915 Female, age 42, unknown 18.3
1942 Male, age 51, unknown 17.5
2218 Male, age 76, both hemispheres 17.3
2021 Male, age 53, unknown 16.6
2223 Female, age 72, unknown 16.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.1
Samples: 139

Max nTPM: 33.4
Min nTPM: 8.0
Std nTPM: 5.1
Median nTPM: 17.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 33.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 32.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 30.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 29.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 29.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 29.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 29.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 27.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 27.7
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 27.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 27.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 70.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 70.4
FF:10158-103A5 76 years, female 70.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 36.2
Pig sample Sample description nTPM
Midbrain
nTPM: 36.2
Samples: 4

Max nTPM: 48.4
Min nTPM: 30.0
Sample A Female 48.4
Sample B Female 32.7
Sample C Male 33.7
Sample D Male 30.0
Periaqueductal gray
nTPM: 28.6
Samples: 3

Max nTPM: 29.1
Min nTPM: 28.0
Sample B Female 28.7
Sample C Male 28.0
Sample D Male 29.1
Substantia nigra
nTPM: 32.2
Samples: 4

Max nTPM: 39.5
Min nTPM: 26.3
Sample A Female 39.5
Sample B Female 26.3
Sample C Male 33.9
Sample D Male 29.1
Superior colliculi
nTPM: 33.1
Samples: 4

Max nTPM: 38.1
Min nTPM: 29.1
Sample A Female 38.1
Sample B Female 29.1
Sample C Male 32.2
Sample D Male 32.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 51.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 51.0
Samples: 4

Max nTPM: 52.3
Min nTPM: 50.0
Sample A Male 50.0
Sample B Male 52.3
Sample C Female 50.0
Sample D Female 51.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
77454993 Antisense, RP_070129_01_F01, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.