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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:368.6 nTPM
HPA:368.6 nTPM
GTEx:386.2 nTPM
FANTOM5:437.9 Scaled Tags Per Million
Pig:331.0 nTPM
Mouse:373.3 nTPM
Allen mouse:25.3 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 368.6
Sample id Sample description nTPM
Amygdala
nTPM: 252.4
2517 Female, age 94, left hemisphere 269.2
2814 Male, age 76, right hemisphere 268.9
1987 Female, age 91, left hemisphere 264.7
2514 Male, age 75, right hemisphere 240.2
2695 Female, age 67, right hemisphere 219.1
Basal amygdala
nTPM: 306.8
2243 Female, age 91, right hemisphere 388.1
2110 Male, age 80, left hemisphere 340.1
2685 Female, age 94, left hemisphere 333.3
1955 Male, age 76, both hemispheres 290.9
2609 Male, age 75, right hemisphere 260.5
2827 Female, age 67, right hemisphere 228.1
Central amygdala
nTPM: 259.1
2239 Male, age 80, left hemisphere 309.7
2826 Female, age 94, left hemisphere 259.3
1905 Male, age 76, both hemispheres 247.5
2701 Female, age 91, right hemisphere 244.6
2515 Male, age 75, right hemisphere 234.5
Corticomedial amygdala
nTPM: 302.7
2829 Male, age 80, left hemisphere 381.7
2429 Female, age 94, left hemisphere 334.7
2242 Female, age 91, right hemisphere 298.2
2240 Male, age 76, both hemispheres 285.3
2535 Female, age 67, right hemisphere 259.3
2428 Male, age 75, right hemisphere 256.9
Lateral amygdala
nTPM: 260.0
2534 Female, age 94, left hemisphere 297.9
1883 Male, age 76, both hemispheres 284.7
2256 Male, age 80, left hemisphere 278.0
2255 Female, age 91, right hemisphere 251.9
2516 Male, age 75, right hemisphere 244.2
2830 Female, age 67, right hemisphere 203.3
Stria terminalis, bed nucleus
nTPM: 368.6
1974 Female, age 91, both hemispheres 473.2
2486 Female, age 94, both hemispheres 423.3
2201 Male, age 74, unknown 209.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 386.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 386.2
Samples: 152

Max nTPM: 1014.9
Min nTPM: 79.5
Std nTPM: 202.0
Median nTPM: 340.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 1014.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 981.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 953.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 923.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 869.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 840.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 763.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 758.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 744.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 729.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 728.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 716.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 708.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 707.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 703.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 696.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 695.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 666.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 660.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 655.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 655.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 620.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 599.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 578.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 577.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 576.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 569.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 568.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 557.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 554.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 548.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 536.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 527.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 524.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 516.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 509.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 504.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 489.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 489.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 482.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 481.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 480.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 479.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 476.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 466.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 461.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 460.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 453.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 450.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 447.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 440.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 440.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 436.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 434.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 421.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 420.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 420.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 413.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 408.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 405.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 402.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 401.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 400.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 400.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 389.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 386.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 386.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 378.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 375.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 374.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 354.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 352.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 351.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 348.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 345.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 340.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 340.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 331.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 330.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 329.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 329.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 327.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 326.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 326.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 324.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 322.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 316.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 315.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 315.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 302.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 301.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 298.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 294.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 293.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 292.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 286.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 284.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 283.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 274.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 273.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 269.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 262.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 261.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 256.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 254.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 246.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 243.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 239.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 236.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 235.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 235.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 229.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 223.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 221.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 217.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 213.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 209.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 209.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 208.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 205.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 205.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 201.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 200.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 197.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 196.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 196.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 190.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 190.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 189.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 188.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 184.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 176.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 176.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 176.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 175.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 174.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 171.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 169.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 169.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 168.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 167.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 164.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 164.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 155.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 143.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 136.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 125.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 101.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 98.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 86.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 83.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 79.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 437.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 437.9
FF:10151-102I7 76 years, female 437.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 331.0
Pig sample Sample description nTPM
Amygdala
nTPM: 331.0
Samples: 4

Max nTPM: 472.4
Min nTPM: 257.1
Sample A Female 472.4
Sample B Female 267.7
Sample C Male 257.1
Sample D Male 326.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 373.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 373.3
Samples: 4

Max nTPM: 398.9
Min nTPM: 344.2
Sample A Male 382.5
Sample B Male 398.9
Sample C Female 367.4
Sample D Female 344.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 25.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 25.3
69838711 Antisense, RP_050317_04_F05, Mouse strain C57BL/6J (56 days, male) 28.0
73718053 Antisense, RP_051121_04_C07, Mouse strain C57BL/6J (56 days, male) 22.5

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