MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:440.5 nTPM
HPA:440.5 nTPM
GTEx:437.9 nTPM
FANTOM5:296.3 Scaled Tags Per Million
Pig:268.8 nTPM
Mouse:865.0 nTPM
Allen mouse:22.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 440.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 405.2
2586 Male, age 75, left hemisphere 464.9
1827 Male, age 72, unknown 445.2
2666 Male, age 74, left hemisphere 439.9
2828 Female, age 72, unknown 395.3
2019 Male, age 18, unknown 393.9
2219 Male, age 76, both hemispheres 388.5
1870 Female, age 42, unknown 388.2
2411 Female, age 72, unknown 387.4
1833 Male, age 53, unknown 380.6
1830 Male, age 51, unknown 368.2
Dorsal raphe nucleus
nTPM: 391.0
2298 Female, age 72, unknown 417.2
2047 Male, age 72, unknown 412.5
1828 Male, age 53, unknown 390.6
2750 Male, age 76, both hemispheres 378.3
2016 Female, age 72, unknown 356.5
Inferior colliculus
nTPM: 440.5
2097 Female, age 72, unknown 464.4
2849 Male, age 72, unknown 444.0
1848 Female, age 42, unknown 432.2
1890 Male, age 53, unknown 421.3
Median raphe nucleus
nTPM: 403.9
2220 Male, age 76, midline 403.9
Pedunculopontine tegmental nucleus
nTPM: 384.8
1921 Female, age 85, both hemispheres 410.3
2334 Male, age 80, both hemispheres 390.1
2338 Male, age 61, both hemispheres 354.0
Periaquaductal grey, anterior
nTPM: 425.8
1947 Male, age 18, unknown 447.1
1795 Male, age 51, unknown 418.2
2502 Female, age 75, unknown 412.2
Periaquaductal grey, dorsal
nTPM: 393.7
1840 Male, age 53, unknown 421.7
1831 Male, age 72, unknown 392.4
2464 Female, age 72, unknown 386.1
2850 Male, age 76, both hemispheres 374.7
Periaquaductal grey, lateral
nTPM: 364.1
2053 Male, age 18, unknown 383.8
2140 Male, age 76, both hemispheres 369.2
2272 Male, age 74, both hemispheres 339.3
Pretectal area
nTPM: 416.2
1816 Male, age 51, unknown 481.4
1944 Female, age 72, unknown 470.1
2007 Male, age 72, unknown 467.3
1817 Female, age 42, unknown 452.6
1815 Male, age 53, unknown 417.7
2667 Female, age 75, unknown 414.2
2825 Male, age 18, unknown 394.8
2224 Female, age 72, unknown 394.7
2407 Male, age 75, both hemispheres 380.8
2316 Male, age 76, right hemisphere 366.4
2273 Male, age 74, both hemispheres 337.7
Red nucleus
nTPM: 388.3
1821 Female, age 72, unknown 425.9
2588 Male, age 74, left hemisphere 413.4
2584 Male, age 75, left hemisphere 408.0
2725 Female, age 75, unknown 400.1
2785 Male, age 18, unknown 391.4
2503 Female, age 72, unknown 387.5
1954 Female, age 42, unknown 382.1
2769 Male, age 72, unknown 381.1
2227 Male, age 72, unknown 375.6
2823 Male, age 76, right hemisphere 368.8
1865 Male, age 51, unknown 367.1
1904 Male, age 53, unknown 358.9
Substantia nigra
nTPM: 408.0
1889 Female, age 72, unknown 447.4
1941 Male, age 53, unknown 442.7
1916 Female, age 42, unknown 439.1
2665 Male, age 74, both hemispheres 417.2
1851 Male, age 51, unknown 412.2
2583 Male, age 75, right hemisphere 395.8
2590 Female, age 75, unknown 391.8
2241 Male, age 72, unknown 389.7
2409 Female, age 72, unknown 374.0
2699 Male, age 18, unknown 369.5
Superior colliculus
nTPM: 403.1
2664 Male, age 75, both hemispheres 440.4
1796 Male, age 53, unknown 433.3
2087 Female, age 72, unknown 431.9
2261 Male, age 18, unknown 418.0
1895 Male, age 76, right hemisphere 415.2
2668 Female, age 75, unknown 410.1
1839 Male, age 51, unknown 402.4
2587 Male, age 74, left hemisphere 388.5
1913 Female, age 42, unknown 352.2
1995 Male, age 72, unknown 339.3
Ventral tegmental area
nTPM: 394.5
1915 Female, age 42, unknown 431.1
2410 Female, age 72, unknown 399.3
2218 Male, age 76, both hemispheres 398.6
1942 Male, age 51, unknown 395.5
2223 Female, age 72, unknown 372.2
2021 Male, age 53, unknown 370.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 437.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 437.9
Samples: 139

Max nTPM: 1203.9
Min nTPM: 236.9
Std nTPM: 133.9
Median nTPM: 411.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1203.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 833.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 832.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 777.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 748.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 700.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 686.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 679.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 641.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 635.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 630.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 296.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 296.3
FF:10158-103A5 76 years, female 296.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 268.8
Pig sample Sample description nTPM
Midbrain
nTPM: 216.7
Samples: 4

Max nTPM: 298.2
Min nTPM: 114.2
Sample A Female 114.2
Sample B Female 168.0
Sample C Male 298.2
Sample D Male 286.2
Periaqueductal gray
nTPM: 149.4
Samples: 3

Max nTPM: 172.9
Min nTPM: 129.6
Sample B Female 145.8
Sample C Male 172.9
Sample D Male 129.6
Substantia nigra
nTPM: 165.3
Samples: 4

Max nTPM: 241.7
Min nTPM: 85.7
Sample A Female 241.7
Sample B Female 120.0
Sample C Male 213.6
Sample D Male 85.7
Superior colliculi
nTPM: 268.8
Samples: 4

Max nTPM: 373.2
Min nTPM: 153.1
Sample A Female 304.0
Sample B Female 153.1
Sample C Male 373.2
Sample D Male 245.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 865.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 865.0
Samples: 4

Max nTPM: 873.4
Min nTPM: 856.9
Sample A Male 868.2
Sample B Male 873.4
Sample C Female 861.5
Sample D Female 856.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 22.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 22.3
68563043 Antisense, RP_050125_01_A05, Mouse strain C57BL/6J (56 days, male) 26.2
70302222 Antisense, RP_050607_03_H03, Mouse strain C57BL/6J (56 days, male) 18.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.