MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:100.4 nTPM
HPA:100.4 nTPM
GTEx:152.4 nTPM
FANTOM5:264.9 Scaled Tags Per Million
Mouse:115.4 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 100.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 91.0
1870 Female, age 42, unknown 104.5
2666 Male, age 74, left hemisphere 100.8
2019 Male, age 18, unknown 94.7
2586 Male, age 75, left hemisphere 92.7
2828 Female, age 72, unknown 90.6
1827 Male, age 72, unknown 90.0
2411 Female, age 72, unknown 88.6
1830 Male, age 51, unknown 86.3
1833 Male, age 53, unknown 86.1
2219 Male, age 76, both hemispheres 76.0
Dorsal raphe nucleus
nTPM: 88.4
2047 Male, age 72, unknown 91.8
2750 Male, age 76, both hemispheres 90.3
2298 Female, age 72, unknown 88.1
1828 Male, age 53, unknown 86.4
2016 Female, age 72, unknown 85.3
Inferior colliculus
nTPM: 80.1
1890 Male, age 53, unknown 85.7
2097 Female, age 72, unknown 83.6
1848 Female, age 42, unknown 77.4
2849 Male, age 72, unknown 73.6
Median raphe nucleus
nTPM: 86.3
2220 Male, age 76, midline 86.3
Pedunculopontine tegmental nucleus
nTPM: 82.9
2334 Male, age 80, both hemispheres 90.3
1921 Female, age 85, both hemispheres 82.7
2338 Male, age 61, both hemispheres 75.7
Periaquaductal grey, anterior
nTPM: 86.5
2502 Female, age 75, unknown 88.6
1947 Male, age 18, unknown 87.7
1795 Male, age 51, unknown 83.1
Periaquaductal grey, dorsal
nTPM: 79.2
1831 Male, age 72, unknown 86.5
1840 Male, age 53, unknown 79.9
2850 Male, age 76, both hemispheres 75.8
2464 Female, age 72, unknown 74.4
Periaquaductal grey, lateral
nTPM: 75.9
2053 Male, age 18, unknown 82.7
2272 Male, age 74, both hemispheres 73.7
2140 Male, age 76, both hemispheres 71.3
Pretectal area
nTPM: 87.4
1817 Female, age 42, unknown 95.7
1815 Male, age 53, unknown 95.3
2007 Male, age 72, unknown 95.1
1816 Male, age 51, unknown 93.0
2407 Male, age 75, both hemispheres 88.7
1944 Female, age 72, unknown 87.4
2667 Female, age 75, unknown 86.4
2825 Male, age 18, unknown 81.7
2224 Female, age 72, unknown 80.8
2273 Male, age 74, both hemispheres 80.3
2316 Male, age 76, right hemisphere 77.3
Red nucleus
nTPM: 98.5
1821 Female, age 72, unknown 110.6
1865 Male, age 51, unknown 106.4
2588 Male, age 74, left hemisphere 104.7
2725 Female, age 75, unknown 102.0
2503 Female, age 72, unknown 101.2
1904 Male, age 53, unknown 100.7
2584 Male, age 75, left hemisphere 100.4
1954 Female, age 42, unknown 94.0
2227 Male, age 72, unknown 92.2
2769 Male, age 72, unknown 91.7
2823 Male, age 76, right hemisphere 89.5
2785 Male, age 18, unknown 88.9
Substantia nigra
nTPM: 100.0
1851 Male, age 51, unknown 113.6
2699 Male, age 18, unknown 110.8
2583 Male, age 75, right hemisphere 106.6
1916 Female, age 42, unknown 101.9
2665 Male, age 74, both hemispheres 99.6
1889 Female, age 72, unknown 95.6
2409 Female, age 72, unknown 95.5
2241 Male, age 72, unknown 93.2
1941 Male, age 53, unknown 93.0
2590 Female, age 75, unknown 90.0
Superior colliculus
nTPM: 90.2
2587 Male, age 74, left hemisphere 103.4
1913 Female, age 42, unknown 101.6
1995 Male, age 72, unknown 96.2
2668 Female, age 75, unknown 94.1
1796 Male, age 53, unknown 90.3
2664 Male, age 75, both hemispheres 89.3
2087 Female, age 72, unknown 84.3
2261 Male, age 18, unknown 82.3
1895 Male, age 76, right hemisphere 81.0
1839 Male, age 51, unknown 79.9
Ventral tegmental area
nTPM: 100.4
2223 Female, age 72, unknown 136.5
1915 Female, age 42, unknown 99.3
1942 Male, age 51, unknown 93.1
2021 Male, age 53, unknown 92.8
2410 Female, age 72, unknown 91.6
2218 Male, age 76, both hemispheres 88.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 152.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 152.4
Samples: 139

Max nTPM: 439.6
Min nTPM: 85.6
Std nTPM: 47.2
Median nTPM: 141.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 439.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 320.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 279.0
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 274.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 253.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 237.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 231.3
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 220.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 217.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 214.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 210.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 264.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 264.9
FF:10158-103A5 76 years, female 264.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 115.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 115.4
Samples: 4

Max nTPM: 122.6
Min nTPM: 98.3
Sample A Male 118.7
Sample B Male 122.6
Sample C Female 98.3
Sample D Female 122.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
74357597 Antisense, RP_060117_01_A12, Mouse strain C57BL/6J (56 days, male) 0.0

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