BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:56.1 nTPM
HPA:56.1 nTPM
GTEx:55.3 nTPM
FANTOM5:32.2 Scaled Tags Per Million
Pig:61.9 nTPM
Mouse:87.5 nTPM
Allen mouse:0.6 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi
Antibody HPA046114
Glial cells Low
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 56.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 53.8
2481 Female, age 94, left hemisphere 57.9
1854 Male, age 80, left hemisphere 55.7
1857 Female, age 85, left hemisphere 55.7
2288 Male, age 75, left hemisphere 54.5
2846 Female, age 79, unknown 53.3
2290 Female, age 72, unknown 52.5
1781 Male, age 74, unknown 51.6
2289 Male, age 61, right hemisphere 49.2
Claustrum
nTPM: 50.8
2198 Male, age 80, both hemispheres 53.3
2392 Female, age 94, both hemispheres 52.8
2491 Male, age 75, both hemispheres 52.8
1956 Male, age 74, unknown 51.6
2568 Male, age 61, both hemispheres 50.4
2196 Female, age 79, unknown 50.1
2284 Female, age 91, both hemispheres 49.7
2645 Female, age 72, unknown 48.5
2292 Female, age 85, both hemispheres 48.4
Globus pallidus, externus
nTPM: 53.8
2772 Female, age 79, unknown 59.2
1996 Male, age 80, right hemisphere 57.9
2395 Male, age 75, both hemispheres 55.6
2646 Male, age 61, right hemisphere 48.7
2567 Female, age 72, unknown 47.9
Globus pallidus, internus
nTPM: 54.4
2037 Male, age 80, right hemisphere 57.5
2287 Male, age 75, right hemisphere 57.5
1818 Male, age 74, unknown 56.7
2778 Female, age 91, both hemispheres 55.7
2483 Female, age 94, right hemisphere 54.8
2111 Female, age 85, right hemisphere 49.5
2566 Female, age 72, unknown 49.2
Nucleus accumbens
nTPM: 54.1
2286 Male, age 75, left hemisphere 57.0
2391 Female, age 94, left hemisphere 57.0
1856 Female, age 91, right hemisphere 56.3
1806 Female, age 85, left hemisphere 54.1
2698 Female, age 72, unknown 53.9
2732 Male, age 80, right hemisphere 52.1
2824 Male, age 61, right hemisphere 51.5
1783 Male, age 74, unknown 50.7
Nucleus basalis of Meynert
nTPM: 52.4
2393 Male, age 80, right hemisphere 54.7
2821 Male, age 75, both hemispheres 54.3
2484 Female, age 94, left hemisphere 51.7
2569 Male, age 61, both hemispheres 48.8
Nucleus of the diagonal band
nTPM: 56.1
1812 Female, age 91, both hemispheres 60.6
2775 Male, age 80, right hemisphere 58.3
2029 Male, age 61, right hemisphere 56.2
2195 Female, age 85, both hemispheres 53.8
1979 Male, age 74, unknown 51.7
Olfactory tubercle
nTPM: 54.9
1846 Male, age 80, right hemisphere 58.6
1998 Female, age 91, both hemispheres 54.8
2487 Female, age 94, left hemisphere 54.1
2856 Male, age 75, right hemisphere 52.1
Putamen
nTPM: 52.8
2482 Female, age 94, left hemisphere 56.6
1838 Male, age 80, right hemisphere 56.4
1937 Female, age 91, right hemisphere 55.7
1829 Male, age 74, unknown 52.3
2466 Female, age 79, unknown 52.3
2647 Male, age 75, left hemisphere 48.7
2489 Female, age 72, unknown 47.8
Septal nuclei
nTPM: 54.5
2031 Female, age 72, unknown 59.5
2009 Female, age 91, both hemispheres 57.0
2629 Female, age 94, right hemisphere 56.1
1960 Male, age 74, unknown 54.2
2394 Male, age 61, left hemisphere 52.9
2199 Male, age 80, right hemisphere 51.8
2059 Female, age 85, both hemispheres 50.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 55.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 53.9
Samples: 246

Max nTPM: 111.8
Min nTPM: 36.4
Std nTPM: 11.5
Median nTPM: 51.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 111.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 111.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 105.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 99.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 97.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 92.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 90.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 77.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 75.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 75.0
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 73.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 55.3
Samples: 246

Max nTPM: 117.6
Min nTPM: 32.0
Std nTPM: 11.8
Median nTPM: 54.0
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 117.6
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 108.2
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 97.8
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 93.9
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 89.8
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 89.0
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 84.5
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 84.4
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 81.7
GTEX-13G51-0011-R6b-SM-5LZX4 60-69 years, male 76.2
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 75.8
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Brain - Putamen (basal ganglia)
Average nTPM: 54.0
Samples: 205

Max nTPM: 100.1
Min nTPM: 36.0
Std nTPM: 9.6
Median nTPM: 53.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 100.1
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 86.1
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 76.8
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 75.8
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 74.3
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 74.2
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 74.0
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 73.2
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 72.6
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 72.1
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 71.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 20.8
FF:10164-103B2 76 years, female 20.8
Globus pallidus
Scaled Tags Per Million: 22.4
FF:10175-103C4 60 years, female 26.8
FF:10161-103A8 76 years, female 18.0
Nucleus accumbens
Scaled Tags Per Million: 32.2
FF:10037-101F1 23-56 years, mixed 32.2
Putamen
Scaled Tags Per Million: 25.3
FF:10176-103C5 60 years, female 25.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 61.9
Pig sample Sample description nTPM
Caudate
nTPM: 48.3
Samples: 4

Max nTPM: 51.7
Min nTPM: 39.9
Sample A Female 50.2
Sample B Female 51.2
Sample C Male 51.7
Sample D Male 39.9
Putamen
nTPM: 61.9
Samples: 4

Max nTPM: 77.6
Min nTPM: 46.3
Sample A Female 66.6
Sample B Female 46.3
Sample C Male 77.6
Sample D Male 57.0
Septum
nTPM: 61.6
Samples: 4

Max nTPM: 76.0
Min nTPM: 47.8
Sample A Female 64.5
Sample B Female 57.9
Sample C Male 76.0
Sample D Male 47.8
Ventral pallidum
nTPM: 52.7
Samples: 4

Max nTPM: 62.3
Min nTPM: 45.0
Sample A Female 45.0
Sample B Female 57.0
Sample C Male 62.3
Sample D Male 46.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 87.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 87.5
Samples: 4

Max nTPM: 98.9
Min nTPM: 77.6
Sample A Male 91.0
Sample B Male 82.6
Sample C Female 98.9
Sample D Female 77.6
Septum
nTPM: 82.1
Samples: 4

Max nTPM: 94.2
Min nTPM: 66.4
Sample A Male 66.4
Sample B Male 86.7
Sample C Female 94.2
Sample D Female 80.9
Ventral forebrain
nTPM: 79.1
Samples: 4

Max nTPM: 93.8
Min nTPM: 67.7
Sample A Male 74.6
Sample B Male 80.4
Sample C Female 93.8
Sample D Female 67.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.6
68744773 Antisense, RP_050208_01_F04, Mouse strain C57BL/6J (56 days, male) 0.6
Pallidum
Expression energy: 0.6
68744773 Antisense, RP_050208_01_F04, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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