MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:58.6 nTPM
HPA:58.6 nTPM
GTEx:76.9 nTPM
FANTOM5:20.6 Scaled Tags Per Million
Pig:79.8 nTPM
Mouse:85.9 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 58.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.0
2411 Female, age 72, unknown 57.3
1870 Female, age 42, unknown 57.1
2019 Male, age 18, unknown 55.0
1833 Male, age 53, unknown 54.9
1827 Male, age 72, unknown 54.8
2219 Male, age 76, both hemispheres 53.5
1830 Male, age 51, unknown 53.3
2666 Male, age 74, left hemisphere 52.8
2828 Female, age 72, unknown 51.0
2586 Male, age 75, left hemisphere 50.6
Dorsal raphe nucleus
nTPM: 57.2
1828 Male, age 53, unknown 59.9
2298 Female, age 72, unknown 58.2
2047 Male, age 72, unknown 57.7
2016 Female, age 72, unknown 55.5
2750 Male, age 76, both hemispheres 54.6
Inferior colliculus
nTPM: 55.3
1848 Female, age 42, unknown 56.7
2097 Female, age 72, unknown 56.2
1890 Male, age 53, unknown 55.3
2849 Male, age 72, unknown 53.0
Median raphe nucleus
nTPM: 56.2
2220 Male, age 76, midline 56.2
Pedunculopontine tegmental nucleus
nTPM: 56.9
2334 Male, age 80, both hemispheres 59.4
1921 Female, age 85, both hemispheres 57.6
2338 Male, age 61, both hemispheres 53.7
Periaquaductal grey, anterior
nTPM: 55.7
1947 Male, age 18, unknown 57.8
2502 Female, age 75, unknown 56.0
1795 Male, age 51, unknown 53.4
Periaquaductal grey, dorsal
nTPM: 54.2
1840 Male, age 53, unknown 55.0
2850 Male, age 76, both hemispheres 54.7
1831 Male, age 72, unknown 54.0
2464 Female, age 72, unknown 53.2
Periaquaductal grey, lateral
nTPM: 54.2
2272 Male, age 74, both hemispheres 55.7
2053 Male, age 18, unknown 54.1
2140 Male, age 76, both hemispheres 52.7
Pretectal area
nTPM: 54.3
2224 Female, age 72, unknown 58.4
2273 Male, age 74, both hemispheres 55.8
2667 Female, age 75, unknown 55.6
2007 Male, age 72, unknown 55.1
1944 Female, age 72, unknown 54.8
1816 Male, age 51, unknown 54.3
2825 Male, age 18, unknown 53.9
1817 Female, age 42, unknown 53.8
1815 Male, age 53, unknown 52.9
2316 Male, age 76, right hemisphere 52.3
2407 Male, age 75, both hemispheres 50.0
Red nucleus
nTPM: 53.3
1821 Female, age 72, unknown 59.5
1954 Female, age 42, unknown 54.7
2823 Male, age 76, right hemisphere 53.8
2725 Female, age 75, unknown 53.7
2503 Female, age 72, unknown 53.0
1865 Male, age 51, unknown 52.9
1904 Male, age 53, unknown 52.8
2227 Male, age 72, unknown 52.7
2769 Male, age 72, unknown 52.6
2584 Male, age 75, left hemisphere 52.2
2785 Male, age 18, unknown 51.2
2588 Male, age 74, left hemisphere 50.6
Substantia nigra
nTPM: 58.6
2241 Male, age 72, unknown 65.5
1916 Female, age 42, unknown 64.2
1851 Male, age 51, unknown 61.4
2699 Male, age 18, unknown 59.3
1889 Female, age 72, unknown 57.5
2409 Female, age 72, unknown 57.1
1941 Male, age 53, unknown 56.6
2665 Male, age 74, both hemispheres 56.3
2590 Female, age 75, unknown 55.6
2583 Male, age 75, right hemisphere 52.6
Superior colliculus
nTPM: 52.8
1895 Male, age 76, right hemisphere 56.4
2587 Male, age 74, left hemisphere 55.7
1839 Male, age 51, unknown 54.1
1796 Male, age 53, unknown 52.9
2668 Female, age 75, unknown 52.8
2087 Female, age 72, unknown 52.2
2664 Male, age 75, both hemispheres 52.0
2261 Male, age 18, unknown 51.6
1913 Female, age 42, unknown 50.9
1995 Male, age 72, unknown 49.7
Ventral tegmental area
nTPM: 58.0
1915 Female, age 42, unknown 61.9
2410 Female, age 72, unknown 60.9
2218 Male, age 76, both hemispheres 57.8
1942 Male, age 51, unknown 56.9
2021 Male, age 53, unknown 56.3
2223 Female, age 72, unknown 54.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 76.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 76.9
Samples: 139

Max nTPM: 159.6
Min nTPM: 41.3
Std nTPM: 21.7
Median nTPM: 74.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 159.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 137.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 137.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 120.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 120.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 115.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 114.1
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 114.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 112.0
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 110.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 109.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.6
FF:10158-103A5 76 years, female 20.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 79.8
Pig sample Sample description nTPM
Midbrain
nTPM: 73.9
Samples: 4

Max nTPM: 91.0
Min nTPM: 59.2
Sample A Female 91.0
Sample B Female 85.7
Sample C Male 59.2
Sample D Male 59.5
Periaqueductal gray
nTPM: 72.7
Samples: 3

Max nTPM: 80.1
Min nTPM: 68.4
Sample B Female 69.6
Sample C Male 80.1
Sample D Male 68.4
Substantia nigra
nTPM: 73.8
Samples: 4

Max nTPM: 100.9
Min nTPM: 47.7
Sample A Female 100.9
Sample B Female 67.5
Sample C Male 79.0
Sample D Male 47.7
Superior colliculi
nTPM: 79.8
Samples: 4

Max nTPM: 97.3
Min nTPM: 68.5
Sample A Female 97.3
Sample B Female 69.9
Sample C Male 83.4
Sample D Male 68.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 85.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 85.9
Samples: 4

Max nTPM: 98.8
Min nTPM: 79.9
Sample A Male 98.8
Sample B Male 81.3
Sample C Female 79.9
Sample D Female 83.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
68744773 Antisense, RP_050208_01_F04, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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