BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:57.8 nTPM
HPA:57.8 nTPM
GTEx:47.9 nTPM
FANTOM5:160.9 Scaled Tags Per Million
Pig:19.7 nTPM
Mouse:127.5 nTPM
Allen mouse:2.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA037646Antibody HPA043891Antibody CAB033765Antibody CAB079995
Glial cells MediumLowLowMedium
Neuronal cells MediumMediumMediumMedium








BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 57.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 55.4
2846 Female, age 79, unknown 59.6
2481 Female, age 94, left hemisphere 59.2
1854 Male, age 80, left hemisphere 56.0
1857 Female, age 85, left hemisphere 55.7
1781 Male, age 74, unknown 54.6
2288 Male, age 75, left hemisphere 54.4
2290 Female, age 72, unknown 54.1
2289 Male, age 61, right hemisphere 49.7
Claustrum
nTPM: 51.8
2198 Male, age 80, both hemispheres 56.4
2392 Female, age 94, both hemispheres 54.0
2196 Female, age 79, unknown 52.8
1956 Male, age 74, unknown 52.6
2491 Male, age 75, both hemispheres 51.7
2284 Female, age 91, both hemispheres 51.6
2568 Male, age 61, both hemispheres 49.9
2292 Female, age 85, both hemispheres 49.0
2645 Female, age 72, unknown 48.7
Globus pallidus, externus
nTPM: 49.2
2395 Male, age 75, both hemispheres 55.1
2772 Female, age 79, unknown 55.0
1996 Male, age 80, right hemisphere 50.3
2646 Male, age 61, right hemisphere 43.1
2567 Female, age 72, unknown 42.6
Globus pallidus, internus
nTPM: 49.9
2287 Male, age 75, right hemisphere 55.9
2483 Female, age 94, right hemisphere 55.3
2778 Female, age 91, both hemispheres 51.0
1818 Male, age 74, unknown 49.3
2037 Male, age 80, right hemisphere 48.9
2566 Female, age 72, unknown 45.5
2111 Female, age 85, right hemisphere 43.5
Nucleus accumbens
nTPM: 54.4
1856 Female, age 91, right hemisphere 62.1
2286 Male, age 75, left hemisphere 56.7
1783 Male, age 74, unknown 55.8
1806 Female, age 85, left hemisphere 54.6
2698 Female, age 72, unknown 53.7
2391 Female, age 94, left hemisphere 53.1
2824 Male, age 61, right hemisphere 50.8
2732 Male, age 80, right hemisphere 48.4
Nucleus basalis of Meynert
nTPM: 50.5
2484 Female, age 94, left hemisphere 53.8
2393 Male, age 80, right hemisphere 53.7
2821 Male, age 75, both hemispheres 51.6
2569 Male, age 61, both hemispheres 42.7
Nucleus of the diagonal band
nTPM: 57.8
1812 Female, age 91, both hemispheres 62.6
2775 Male, age 80, right hemisphere 60.9
2195 Female, age 85, both hemispheres 57.4
2029 Male, age 61, right hemisphere 56.3
1979 Male, age 74, unknown 51.6
Olfactory tubercle
nTPM: 56.7
1846 Male, age 80, right hemisphere 60.5
1998 Female, age 91, both hemispheres 58.6
2487 Female, age 94, left hemisphere 55.8
2856 Male, age 75, right hemisphere 51.8
Putamen
nTPM: 54.2
2466 Female, age 79, unknown 61.1
1838 Male, age 80, right hemisphere 58.6
1937 Female, age 91, right hemisphere 57.1
2482 Female, age 94, left hemisphere 56.2
1829 Male, age 74, unknown 52.4
2647 Male, age 75, left hemisphere 47.1
2489 Female, age 72, unknown 46.8
Septal nuclei
nTPM: 54.8
2031 Female, age 72, unknown 62.4
1960 Male, age 74, unknown 60.6
2009 Female, age 91, both hemispheres 56.5
2629 Female, age 94, right hemisphere 54.6
2199 Male, age 80, right hemisphere 50.0
2059 Female, age 85, both hemispheres 49.9
2394 Male, age 61, left hemisphere 49.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 47.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 45.3
Samples: 246

Max nTPM: 95.7
Min nTPM: 22.7
Std nTPM: 12.5
Median nTPM: 43.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 95.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 90.0
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 79.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 78.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 76.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 76.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 70.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 70.1
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 69.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 69.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 69.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 47.9
Samples: 246

Max nTPM: 103.6
Min nTPM: 20.8
Std nTPM: 12.7
Median nTPM: 48.4
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 103.6
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 82.6
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 80.2
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 79.2
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 75.9
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 72.5
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 70.7
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 70.6
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 69.6
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 69.4
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 69.1
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Brain - Putamen (basal ganglia)
Average nTPM: 44.5
Samples: 205

Max nTPM: 77.3
Min nTPM: 26.2
Std nTPM: 11.1
Median nTPM: 42.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 77.3
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 75.3
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 72.6
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 71.9
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 71.1
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 70.7
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 70.0
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 69.0
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 69.0
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 67.5
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 66.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 160.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 123.4
FF:10164-103B2 76 years, female 123.4
Globus pallidus
Scaled Tags Per Million: 108.4
FF:10175-103C4 60 years, female 116.0
FF:10161-103A8 76 years, female 100.8
Nucleus accumbens
Scaled Tags Per Million: 149.7
FF:10037-101F1 23-56 years, mixed 149.7
Putamen
Scaled Tags Per Million: 160.9
FF:10176-103C5 60 years, female 160.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 19.7
Pig sample Sample description nTPM
Caudate
nTPM: 15.5
Samples: 4

Max nTPM: 16.9
Min nTPM: 14.2
Sample A Female 16.6
Sample B Female 14.3
Sample C Male 16.9
Sample D Male 14.2
Putamen
nTPM: 19.7
Samples: 4

Max nTPM: 29.8
Min nTPM: 15.8
Sample A Female 16.5
Sample B Female 15.8
Sample C Male 29.8
Sample D Male 16.8
Septum
nTPM: 19.6
Samples: 4

Max nTPM: 23.7
Min nTPM: 17.0
Sample A Female 19.2
Sample B Female 17.0
Sample C Male 23.7
Sample D Male 18.5
Ventral pallidum
nTPM: 16.3
Samples: 4

Max nTPM: 18.1
Min nTPM: 13.7
Sample A Female 15.3
Sample B Female 18.0
Sample C Male 18.1
Sample D Male 13.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 127.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 123.1
Samples: 4

Max nTPM: 127.8
Min nTPM: 117.9
Sample A Male 127.8
Sample B Male 117.9
Sample C Female 124.4
Sample D Female 122.2
Septum
nTPM: 121.9
Samples: 4

Max nTPM: 128.3
Min nTPM: 118.3
Sample A Male 122.1
Sample B Male 128.3
Sample C Female 118.7
Sample D Female 118.3
Ventral forebrain
nTPM: 127.5
Samples: 4

Max nTPM: 132.6
Min nTPM: 121.5
Sample A Male 132.6
Sample B Male 125.0
Sample C Female 121.5
Sample D Female 130.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.0
413778 Antisense, RP_040809_01_C10, Mouse strain C57BL/6J (56 days, male) 2.0
Pallidum
Expression energy: 2.3
413778 Antisense, RP_040809_01_C10, Mouse strain C57BL/6J (56 days, male) 2.3

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The Human Protein Atlas

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