MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:25.6 nTPM
HPA:25.6 nTPM
GTEx:22.0 nTPM
FANTOM5:68.9 Scaled Tags Per Million
Pig:34.4 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.2
2219 Male, age 76, both hemispheres 24.5
2411 Female, age 72, unknown 17.2
1870 Female, age 42, unknown 16.7
1833 Male, age 53, unknown 16.1
2666 Male, age 74, left hemisphere 16.1
1830 Male, age 51, unknown 15.1
2019 Male, age 18, unknown 15.1
2586 Male, age 75, left hemisphere 15.1
1827 Male, age 72, unknown 14.2
2828 Female, age 72, unknown 12.2
Dorsal raphe nucleus
nTPM: 13.7
2750 Male, age 76, both hemispheres 14.4
1828 Male, age 53, unknown 14.3
2016 Female, age 72, unknown 13.6
2047 Male, age 72, unknown 13.6
2298 Female, age 72, unknown 12.5
Inferior colliculus
nTPM: 13.5
2097 Female, age 72, unknown 15.5
1890 Male, age 53, unknown 14.8
1848 Female, age 42, unknown 13.2
2849 Male, age 72, unknown 10.5
Median raphe nucleus
nTPM: 15.6
2220 Male, age 76, midline 15.6
Pedunculopontine tegmental nucleus
nTPM: 14.4
2334 Male, age 80, both hemispheres 15.1
1921 Female, age 85, both hemispheres 14.8
2338 Male, age 61, both hemispheres 13.1
Periaquaductal grey, anterior
nTPM: 15.3
2502 Female, age 75, unknown 18.8
1947 Male, age 18, unknown 16.1
1795 Male, age 51, unknown 11.1
Periaquaductal grey, dorsal
nTPM: 12.7
1831 Male, age 72, unknown 13.6
2464 Female, age 72, unknown 13.2
1840 Male, age 53, unknown 12.4
2850 Male, age 76, both hemispheres 11.6
Periaquaductal grey, lateral
nTPM: 11.0
2272 Male, age 74, both hemispheres 12.4
2053 Male, age 18, unknown 10.6
2140 Male, age 76, both hemispheres 10.0
Pretectal area
nTPM: 14.5
2007 Male, age 72, unknown 18.3
1815 Male, age 53, unknown 17.7
1944 Female, age 72, unknown 16.7
1817 Female, age 42, unknown 16.6
1816 Male, age 51, unknown 15.6
2667 Female, age 75, unknown 14.0
2273 Male, age 74, both hemispheres 13.5
2407 Male, age 75, both hemispheres 12.6
2224 Female, age 72, unknown 12.4
2825 Male, age 18, unknown 11.4
2316 Male, age 76, right hemisphere 11.0
Red nucleus
nTPM: 15.3
1821 Female, age 72, unknown 18.4
1904 Male, age 53, unknown 17.3
2725 Female, age 75, unknown 16.7
1954 Female, age 42, unknown 16.1
2584 Male, age 75, left hemisphere 15.8
2503 Female, age 72, unknown 15.6
1865 Male, age 51, unknown 15.5
2588 Male, age 74, left hemisphere 14.9
2785 Male, age 18, unknown 13.9
2227 Male, age 72, unknown 13.5
2769 Male, age 72, unknown 13.4
2823 Male, age 76, right hemisphere 11.8
Substantia nigra
nTPM: 25.6
1916 Female, age 42, unknown 37.3
2699 Male, age 18, unknown 32.7
2241 Male, age 72, unknown 32.6
1851 Male, age 51, unknown 31.3
1941 Male, age 53, unknown 27.4
2409 Female, age 72, unknown 24.8
1889 Female, age 72, unknown 19.7
2665 Male, age 74, both hemispheres 18.2
2583 Male, age 75, right hemisphere 17.3
2590 Female, age 75, unknown 15.2
Superior colliculus
nTPM: 14.0
2668 Female, age 75, unknown 16.9
2087 Female, age 72, unknown 15.3
2261 Male, age 18, unknown 14.5
1913 Female, age 42, unknown 14.1
1995 Male, age 72, unknown 13.8
2587 Male, age 74, left hemisphere 13.8
1895 Male, age 76, right hemisphere 13.2
1796 Male, age 53, unknown 13.0
2664 Male, age 75, both hemispheres 13.0
1839 Male, age 51, unknown 12.6
Ventral tegmental area
nTPM: 23.8
2218 Male, age 76, both hemispheres 30.1
1915 Female, age 42, unknown 27.2
1942 Male, age 51, unknown 25.7
2410 Female, age 72, unknown 25.2
2223 Female, age 72, unknown 20.6
2021 Male, age 53, unknown 13.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 22.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.0
Samples: 139

Max nTPM: 46.9
Min nTPM: 11.1
Std nTPM: 6.8
Median nTPM: 20.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 46.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 45.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 45.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 42.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 39.2
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 35.7
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 35.3
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 35.1
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 35.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 34.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 34.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 68.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 68.9
FF:10158-103A5 76 years, female 68.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 34.4
Pig sample Sample description nTPM
Midbrain
nTPM: 29.1
Samples: 4

Max nTPM: 40.1
Min nTPM: 23.7
Sample A Female 23.7
Sample B Female 25.9
Sample C Male 40.1
Sample D Male 26.5
Periaqueductal gray
nTPM: 22.3
Samples: 3

Max nTPM: 24.3
Min nTPM: 21.1
Sample B Female 21.1
Sample C Male 24.3
Sample D Male 21.6
Substantia nigra
nTPM: 26.7
Samples: 4

Max nTPM: 34.4
Min nTPM: 15.8
Sample A Female 34.4
Sample B Female 28.7
Sample C Male 27.7
Sample D Male 15.8
Superior colliculi
nTPM: 34.4
Samples: 4

Max nTPM: 44.6
Min nTPM: 25.9
Sample A Female 34.6
Sample B Female 44.6
Sample C Male 32.4
Sample D Male 25.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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