BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:38.6 nTPM
HPA:38.6 nTPM
GTEx:23.2 nTPM
FANTOM5:82.1 Scaled Tags Per Million
Pig:6.2 nTPM
Mouse:12.2 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA023924Antibody HPA031526
Glial cells Not detectedMedium
Neuronal cells Not detectedHigh





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 38.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 38.3
1781 Male, age 74, unknown 39.2
2846 Female, age 79, unknown 39.1
1857 Female, age 85, left hemisphere 38.9
2290 Female, age 72, unknown 38.2
1854 Male, age 80, left hemisphere 38.1
2481 Female, age 94, left hemisphere 37.9
2288 Male, age 75, left hemisphere 37.4
2289 Male, age 61, right hemisphere 37.4
Claustrum
nTPM: 37.8
2392 Female, age 94, both hemispheres 39.6
1956 Male, age 74, unknown 38.2
2198 Male, age 80, both hemispheres 38.1
2491 Male, age 75, both hemispheres 38.0
2196 Female, age 79, unknown 37.9
2645 Female, age 72, unknown 37.6
2568 Male, age 61, both hemispheres 37.1
2284 Female, age 91, both hemispheres 36.9
2292 Female, age 85, both hemispheres 36.8
Globus pallidus, externus
nTPM: 37.8
2395 Male, age 75, both hemispheres 39.2
2772 Female, age 79, unknown 38.9
1996 Male, age 80, right hemisphere 38.2
2646 Male, age 61, right hemisphere 36.4
2567 Female, age 72, unknown 36.2
Globus pallidus, internus
nTPM: 37.8
2778 Female, age 91, both hemispheres 39.1
2287 Male, age 75, right hemisphere 38.6
2483 Female, age 94, right hemisphere 38.3
1818 Male, age 74, unknown 37.5
2037 Male, age 80, right hemisphere 37.5
2111 Female, age 85, right hemisphere 37.5
2566 Female, age 72, unknown 36.1
Nucleus accumbens
nTPM: 38.5
1806 Female, age 85, left hemisphere 39.4
1856 Female, age 91, right hemisphere 39.3
2286 Male, age 75, left hemisphere 38.8
2391 Female, age 94, left hemisphere 38.6
2824 Male, age 61, right hemisphere 38.5
1783 Male, age 74, unknown 38.2
2698 Female, age 72, unknown 38.1
2732 Male, age 80, right hemisphere 37.4
Nucleus basalis of Meynert
nTPM: 37.1
2393 Male, age 80, right hemisphere 38.2
2821 Male, age 75, both hemispheres 37.4
2484 Female, age 94, left hemisphere 37.0
2569 Male, age 61, both hemispheres 35.9
Nucleus of the diagonal band
nTPM: 38.6
2775 Male, age 80, right hemisphere 40.0
1812 Female, age 91, both hemispheres 39.4
2195 Female, age 85, both hemispheres 38.0
2029 Male, age 61, right hemisphere 37.8
1979 Male, age 74, unknown 37.7
Olfactory tubercle
nTPM: 38.4
1846 Male, age 80, right hemisphere 39.4
1998 Female, age 91, both hemispheres 38.3
2487 Female, age 94, left hemisphere 38.0
2856 Male, age 75, right hemisphere 38.0
Putamen
nTPM: 37.8
2466 Female, age 79, unknown 39.3
1838 Male, age 80, right hemisphere 38.3
1937 Female, age 91, right hemisphere 38.2
2482 Female, age 94, left hemisphere 38.0
1829 Male, age 74, unknown 37.7
2647 Male, age 75, left hemisphere 36.5
2489 Female, age 72, unknown 36.3
Septal nuclei
nTPM: 37.8
2031 Female, age 72, unknown 40.2
1960 Male, age 74, unknown 39.0
2009 Female, age 91, both hemispheres 38.0
2629 Female, age 94, right hemisphere 37.6
2394 Male, age 61, left hemisphere 36.8
2059 Female, age 85, both hemispheres 36.7
2199 Male, age 80, right hemisphere 36.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 23.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 20.1
Samples: 246

Max nTPM: 52.8
Min nTPM: 6.9
Std nTPM: 7.7
Median nTPM: 19.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 52.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 48.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 46.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 44.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 43.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 39.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 38.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 37.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 37.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 35.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 34.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 23.2
Samples: 246

Max nTPM: 56.2
Min nTPM: 8.0
Std nTPM: 7.5
Median nTPM: 23.0
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 56.2
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 46.1
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 40.3
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 39.8
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 39.3
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 38.6
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 38.2
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 38.1
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 37.6
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 37.2
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 37.0
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Brain - Putamen (basal ganglia)
Average nTPM: 21.3
Samples: 205

Max nTPM: 45.2
Min nTPM: 9.0
Std nTPM: 7.6
Median nTPM: 20.8
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 45.2
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 43.5
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 42.7
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 42.1
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 39.4
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 39.1
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 37.6
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 36.5
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 35.9
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 35.6
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 35.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 82.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 82.1
FF:10164-103B2 76 years, female 82.1
Globus pallidus
Scaled Tags Per Million: 73.8
FF:10175-103C4 60 years, female 97.0
FF:10161-103A8 76 years, female 50.5
Nucleus accumbens
Scaled Tags Per Million: 55.3
FF:10037-101F1 23-56 years, mixed 55.3
Putamen
Scaled Tags Per Million: 79.3
FF:10176-103C5 60 years, female 79.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 6.2
Pig sample Sample description nTPM
Caudate
nTPM: 5.7
Samples: 4

Max nTPM: 6.1
Min nTPM: 5.1
Sample A Female 6.1
Sample B Female 6.0
Sample C Male 5.1
Sample D Male 5.7
Putamen
nTPM: 6.2
Samples: 4

Max nTPM: 7.7
Min nTPM: 5.3
Sample A Female 6.3
Sample B Female 5.4
Sample C Male 5.3
Sample D Male 7.7
Septum
nTPM: 5.5
Samples: 4

Max nTPM: 6.2
Min nTPM: 4.7
Sample A Female 6.2
Sample B Female 5.6
Sample C Male 4.7
Sample D Male 5.6
Ventral pallidum
nTPM: 6.0
Samples: 4

Max nTPM: 6.6
Min nTPM: 4.9
Sample A Female 6.6
Sample B Female 6.1
Sample C Male 4.9
Sample D Male 6.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 12.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 12.2
Samples: 4

Max nTPM: 17.3
Min nTPM: 7.6
Sample A Male 7.8
Sample B Male 16.2
Sample C Female 7.6
Sample D Female 17.3
Septum
nTPM: 11.4
Samples: 4

Max nTPM: 14.7
Min nTPM: 7.8
Sample A Male 7.8
Sample B Male 12.1
Sample C Female 11.0
Sample D Female 14.7
Ventral forebrain
nTPM: 9.7
Samples: 4

Max nTPM: 11.7
Min nTPM: 7.5
Sample A Male 11.6
Sample B Male 7.9
Sample C Female 11.7
Sample D Female 7.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
68798603 Antisense, RP_050215_02_H04, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
68798603 Antisense, RP_050215_02_H04, Mouse strain C57BL/6J (56 days, male) 0.1

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