BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1.8 nTPM
HPA:1.8 nTPM
GTEx:1.8 nTPM
FANTOM5:1.1 Scaled Tags Per Million
Mouse:0.0 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 1.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.8
2289 Male, age 61, right hemisphere 2.0
1854 Male, age 80, left hemisphere 1.9
2846 Female, age 79, unknown 1.9
1781 Male, age 74, unknown 1.8
1857 Female, age 85, left hemisphere 1.8
2288 Male, age 75, left hemisphere 1.7
2290 Female, age 72, unknown 1.6
2481 Female, age 94, left hemisphere 1.5
Claustrum
nTPM: 1.5
2198 Male, age 80, both hemispheres 1.7
2284 Female, age 91, both hemispheres 1.6
2568 Male, age 61, both hemispheres 1.6
2645 Female, age 72, unknown 1.6
1956 Male, age 74, unknown 1.5
2196 Female, age 79, unknown 1.5
2292 Female, age 85, both hemispheres 1.4
2491 Male, age 75, both hemispheres 1.4
2392 Female, age 94, both hemispheres 1.3
Globus pallidus, externus
nTPM: 1.8
2646 Male, age 61, right hemisphere 2.0
2395 Male, age 75, both hemispheres 1.9
1996 Male, age 80, right hemisphere 1.8
2567 Female, age 72, unknown 1.6
2772 Female, age 79, unknown 1.6
Globus pallidus, internus
nTPM: 1.6
2566 Female, age 72, unknown 1.8
2483 Female, age 94, right hemisphere 1.7
1818 Male, age 74, unknown 1.6
2287 Male, age 75, right hemisphere 1.6
2778 Female, age 91, both hemispheres 1.6
2037 Male, age 80, right hemisphere 1.5
2111 Female, age 85, right hemisphere 1.5
Nucleus accumbens
nTPM: 1.7
2824 Male, age 61, right hemisphere 2.1
2698 Female, age 72, unknown 1.8
1783 Male, age 74, unknown 1.7
1806 Female, age 85, left hemisphere 1.7
1856 Female, age 91, right hemisphere 1.7
2732 Male, age 80, right hemisphere 1.7
2286 Male, age 75, left hemisphere 1.5
2391 Female, age 94, left hemisphere 1.3
Nucleus basalis of Meynert
nTPM: 1.5
2569 Male, age 61, both hemispheres 1.8
2393 Male, age 80, right hemisphere 1.5
2484 Female, age 94, left hemisphere 1.4
2821 Male, age 75, both hemispheres 1.3
Nucleus of the diagonal band
nTPM: 1.6
1812 Female, age 91, both hemispheres 1.7
2775 Male, age 80, right hemisphere 1.7
1979 Male, age 74, unknown 1.6
2029 Male, age 61, right hemisphere 1.5
2195 Female, age 85, both hemispheres 1.4
Olfactory tubercle
nTPM: 1.7
1846 Male, age 80, right hemisphere 1.9
2487 Female, age 94, left hemisphere 1.8
2856 Male, age 75, right hemisphere 1.6
1998 Female, age 91, both hemispheres 1.5
Putamen
nTPM: 1.7
1838 Male, age 80, right hemisphere 2.0
1937 Female, age 91, right hemisphere 1.8
2466 Female, age 79, unknown 1.8
1829 Male, age 74, unknown 1.6
2647 Male, age 75, left hemisphere 1.6
2489 Female, age 72, unknown 1.5
2482 Female, age 94, left hemisphere 1.4
Septal nuclei
nTPM: 1.6
2394 Male, age 61, left hemisphere 1.8
1960 Male, age 74, unknown 1.7
2009 Female, age 91, both hemispheres 1.7
2059 Female, age 85, both hemispheres 1.6
2199 Male, age 80, right hemisphere 1.6
2629 Female, age 94, right hemisphere 1.6
2031 Female, age 72, unknown 1.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 1.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1.5
Samples: 246

Max nTPM: 4.9
Min nTPM: 0.2
Std nTPM: 0.6
Median nTPM: 1.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 4.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 4.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 3.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 3.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 3.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 3.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 3.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 3.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 2.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 2.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 2.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 1.8
Samples: 246

Max nTPM: 6.7
Min nTPM: 0.2
Std nTPM: 0.7
Median nTPM: 1.8
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 6.7
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 6.0
GTEX-1H1CY-0011-R6b-SM-CE6RP 60-69 years, female 3.7
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 3.6
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 3.4
GTEX-1B8SF-0011-R6b-SM-7MXUD 60-69 years, male 3.4
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 3.3
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 3.3
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 3.3
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 3.2
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 3.1
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Brain - Putamen (basal ganglia)
Average nTPM: 1.5
Samples: 205

Max nTPM: 3.9
Min nTPM: 0.2
Std nTPM: 0.6
Median nTPM: 1.4
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 3.9
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 3.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 3.1
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 3.1
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 2.9
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 2.9
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 2.8
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 2.6
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 2.6
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 2.6
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 2.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.9
FF:10164-103B2 76 years, female 0.9
Globus pallidus
Scaled Tags Per Million: 0.6
FF:10175-103C4 60 years, female 0.7
FF:10161-103A8 76 years, female 0.5
Nucleus accumbens
Scaled Tags Per Million: 1.1
FF:10037-101F1 23-56 years, mixed 1.1
Putamen
Scaled Tags Per Million: 0.6
FF:10176-103C5 60 years, female 0.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0
Septum
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0
Ventral forebrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Male 0.1
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
71991911 Antisense, RP_051012_03_G01, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
71991911 Antisense, RP_051012_03_G01, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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