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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expression
Retinai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Ganglion cells : Not detected
Inner nuclear layer: Not detected
Inner plexiform layer: Not detected
Limiting membrane: Not detected
Nerve fiber layer: Not detected
Outer plexiform layer: Not detected
Photoreceptor cells: High
Pigment epithelial cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:836.0 nTPM
GTEx:836.0 nTPM
FANTOM5:384.2 Scaled Tags Per Million
Pig:153.5 nTPM
Mouse:473.1 nTPM

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA026578
Pigment epithelial cells Not detected
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer Not detected
Inner nuclear layer Not detected
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer Not detected

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 836.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 836.0
Samples: 105

Max nTPM: 1536.2
Min nTPM: 313.6
Std nTPM: 250.7
Median nTPM:
352_1 62 years, male 1536.2
218_1 71 years, female 1529.6
386_1 76 years, male 1329.5
354_1 81 years, female 1306.6
319_1 81 years, male 1283.9
237_1 82 years, male 1247.5
355_1 70 years, female 1242.9
316_1 62 years, male 1220.5
163_1 78 years, male 1220.1
172_1 72 years, female 1189.0
322_1 76 years, male 1180.5
6_1 73 years, female 1172.3
375_1 74 years, female 1144.0
321_1 62 years, female 1122.6
405_1 91 years, male 1120.9
35_1 74 years, female 1105.5
447_1 81 years, male 1098.4
425_1 59 years, female 1090.1
377_1 82 years, female 1071.1
292_1 71 years, male 1068.8
350_1 84 years, female 1039.4
229_1 69 years, female 1038.9
356_1 87 years, female 1028.0
318_1 68 years, male 1004.1
320_1 89 years, female 997.1
353_1 82 years, female 992.5
189_1 76 years, male 990.1
243_1 75 years, male 988.7
379_1 60 years, male 976.5
153_1 70 years, female 967.6
246_1 77 years, male 967.1
389_1 86 years, female 963.7
480_1 63 years, male 963.1
526_1 61 years, male 962.4
293_1 68 years, female 950.6
251_1 78 years, male 932.2
126_1 63 years, male 929.6
376_1 75 years, female 917.0
518_1 75 years, female 912.4
286_1 68 years, female 909.2
335_1 73 years, female 903.5
394_1 75 years, female 901.8
217_1 76 years, male 896.1
503_1 68 years, male 886.5
349_1 83 years, male 883.3
307_1 66 years, female 876.8
348_1 84 years, male 866.0
347_1 72 years, male 859.0
404_1 82 years, female 835.1
468_1 89 years, male 830.5
406_1 79 years, male 826.4
137_1 83 years, male 817.6
177_1 74 years, male 817.0
9_1 66 years, female 808.2
117_1 61 years, male 807.8
81_1 67 years, male 807.3
291_1 76 years, male 789.9
466_1 57 years, female 784.0
415_1 77 years, female 781.1
324_1 76 years, male 771.7
517_1 88 years, male 762.1
17_1 71 years, male 753.2
43_1 64 years, female 747.9
266_1 85 years, male 744.5
2_1 77 years, female 738.9
351_1 91 years, male 733.1
145_1 84 years, male 719.4
311_1 78 years, male 717.9
499_1 55 years, female 709.4
115_1 83 years, male 708.4
396_1 62 years, male 703.3
495_1 57 years, female 702.1
18_1 88 years, male 700.9
99_1 64 years, male 697.1
265_1 87 years, male 694.3
173_1 67 years, male 689.8
384_1 83 years, male 682.7
490_1 67 years, female 679.6
142_1 61 years, female 665.2
254_1 77 years, female 659.7
317_1 60 years, male 657.3
288_1 66 years, female 655.0
264_1 73 years, female 644.6
162_1 79 years, female 633.0
4_1 88 years, female 624.1
506_1 65 years, male 615.1
120_1 70 years, female 599.6
452_1 88 years, female 589.2
42_1 85 years, male 560.3
313_1 79 years, female 552.0
32_1 67 years, male 545.8
139_1 64 years, female 533.3
315_1 62 years, female 523.3
491_1 89 years, female 517.0
295_1 61 years, female 514.9
414_1 84 years, female 506.1
119_1 70 years, female 505.2
109_1 81 years, female 501.0
149_1 88 years, male 488.5
314_1 67 years, male 441.9
41_1 94 years, female 426.0
308_1 70 years, female 400.8
413_1 59 years, female 380.5
89_1 63 years, male 380.2
501_1 88 years, male 313.6
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 384.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 384.2
FF:10030-101E3 24-65 years, mixed 384.2

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 153.5
Pig sample Sample description nTPM
Retina
nTPM: 153.5
Samples: 4

Max nTPM: 175.6
Min nTPM: 133.9
Sample A Female 153.8
Sample B Female 150.6
Sample C Male 175.6
Sample D Male 133.9

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 473.1
Mouse sample Sample description nTPM
Retina
nTPM: 473.1
Samples: 4

Max nTPM: 614.0
Min nTPM: 398.6
Sample A Male 435.1
Sample B Male 444.7
Sample C Female 614.0
Sample D Female 398.6

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by the Knut & Alice Wallenberg Foundation.