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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:200.1 nTPM
HPA:200.1 nTPM
GTEx:163.1 nTPM
FANTOM5:116.0 Scaled Tags Per Million
Pig:19.8 nTPM
Mouse:34.1 nTPM
Allen mouse:0.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 200.1
Sample id Sample description nTPM
Amygdala
nTPM: 165.9
2695 Female, age 67, right hemisphere 195.8
2814 Male, age 76, right hemisphere 171.0
2517 Female, age 94, left hemisphere 157.9
1987 Female, age 91, left hemisphere 153.3
2514 Male, age 75, right hemisphere 151.5
Basal amygdala
nTPM: 177.6
2827 Female, age 67, right hemisphere 261.4
2685 Female, age 94, left hemisphere 174.1
2609 Male, age 75, right hemisphere 173.8
2110 Male, age 80, left hemisphere 158.2
1955 Male, age 76, both hemispheres 150.9
2243 Female, age 91, right hemisphere 147.4
Central amygdala
nTPM: 183.6
2826 Female, age 94, left hemisphere 265.7
2515 Male, age 75, right hemisphere 171.6
2701 Female, age 91, right hemisphere 161.5
1905 Male, age 76, both hemispheres 160.7
2239 Male, age 80, left hemisphere 158.6
Corticomedial amygdala
nTPM: 154.2
2535 Female, age 67, right hemisphere 193.3
2428 Male, age 75, right hemisphere 159.9
2829 Male, age 80, left hemisphere 149.9
2429 Female, age 94, left hemisphere 143.0
2240 Male, age 76, both hemispheres 140.5
2242 Female, age 91, right hemisphere 138.4
Lateral amygdala
nTPM: 200.1
2830 Female, age 67, right hemisphere 313.2
2534 Female, age 94, left hemisphere 192.2
2516 Male, age 75, right hemisphere 189.3
2256 Male, age 80, left hemisphere 182.5
2255 Female, age 91, right hemisphere 162.3
1883 Male, age 76, both hemispheres 161.2
Stria terminalis, bed nucleus
nTPM: 142.3
2201 Male, age 74, unknown 149.6
1974 Female, age 91, both hemispheres 147.8
2486 Female, age 94, both hemispheres 129.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 163.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 163.1
Samples: 152

Max nTPM: 654.6
Min nTPM: 19.1
Std nTPM: 111.8
Median nTPM: 127.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 654.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 502.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 452.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 445.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 443.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 411.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 399.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 379.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 378.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 377.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 374.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 366.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 364.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 341.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 326.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 326.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 321.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 316.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 306.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 305.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 303.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 288.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 286.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 285.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 285.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 284.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 277.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 274.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 270.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 258.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 256.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 255.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 254.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 254.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 247.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 243.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 222.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 214.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 210.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 207.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 206.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 204.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 194.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 186.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 176.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 172.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 169.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 166.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 166.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 164.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 164.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 163.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 159.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 159.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 154.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 153.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 147.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 146.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 144.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 144.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 143.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 143.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 141.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 139.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 139.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 139.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 139.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 138.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 135.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 135.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 132.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 132.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 132.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 132.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 131.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 127.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 127.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 125.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 123.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 119.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 118.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 113.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 113.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 110.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 108.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 108.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 108.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 108.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 105.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 105.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 104.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 101.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 101.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 101.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 99.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 96.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 96.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 95.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 95.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 93.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 93.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 91.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 91.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 91.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 89.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 89.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 89.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 89.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 89.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 89.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 87.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 86.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 86.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 85.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 85.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 84.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 81.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 80.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 79.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 79.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 75.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 75.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 74.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 73.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 73.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 71.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 71.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 71.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 70.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 69.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 66.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 66.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 66.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 65.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 64.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 64.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 62.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 62.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 62.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 60.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 60.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 58.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 57.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 56.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 55.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 53.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 50.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 48.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 47.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 45.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 42.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 19.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 116.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 116.0
FF:10151-102I7 76 years, female 116.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 19.8
Pig sample Sample description nTPM
Amygdala
nTPM: 19.8
Samples: 4

Max nTPM: 24.4
Min nTPM: 15.6
Sample A Female 18.3
Sample B Female 24.4
Sample C Male 20.9
Sample D Male 15.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 34.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 34.2
Samples: 4

Max nTPM: 41.4
Min nTPM: 31.3
Sample A Male 31.3
Sample B Male 31.9
Sample C Female 41.4
Sample D Female 32.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.7
69735765 Antisense, RP_050503_03_E03, Mouse strain C57BL/6J (56 days, male) 0.7

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