MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:216.9 nTPM
HPA:216.9 nTPM
GTEx:230.7 nTPM
FANTOM5:182.4 Scaled Tags Per Million
Pig:58.1 nTPM
Mouse:46.3 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 216.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 195.6
2586 Male, age 75, left hemisphere 233.9
2666 Male, age 74, left hemisphere 221.7
1830 Male, age 51, unknown 201.7
2828 Female, age 72, unknown 197.9
1833 Male, age 53, unknown 197.8
1870 Female, age 42, unknown 192.5
2411 Female, age 72, unknown 187.0
2019 Male, age 18, unknown 185.4
1827 Male, age 72, unknown 172.6
2219 Male, age 76, both hemispheres 165.1
Dorsal raphe nucleus
nTPM: 173.0
2750 Male, age 76, both hemispheres 191.1
2016 Female, age 72, unknown 182.9
1828 Male, age 53, unknown 171.6
2047 Male, age 72, unknown 171.2
2298 Female, age 72, unknown 148.0
Inferior colliculus
nTPM: 171.4
2849 Male, age 72, unknown 181.4
1848 Female, age 42, unknown 178.0
1890 Male, age 53, unknown 173.0
2097 Female, age 72, unknown 153.1
Median raphe nucleus
nTPM: 151.8
2220 Male, age 76, midline 151.8
Pedunculopontine tegmental nucleus
nTPM: 172.4
2334 Male, age 80, both hemispheres 177.4
2338 Male, age 61, both hemispheres 176.7
1921 Female, age 85, both hemispheres 163.1
Periaquaductal grey, anterior
nTPM: 173.5
2502 Female, age 75, unknown 180.7
1947 Male, age 18, unknown 177.2
1795 Male, age 51, unknown 162.7
Periaquaductal grey, dorsal
nTPM: 161.1
2464 Female, age 72, unknown 173.6
1831 Male, age 72, unknown 159.2
2850 Male, age 76, both hemispheres 156.7
1840 Male, age 53, unknown 155.0
Periaquaductal grey, lateral
nTPM: 163.9
2053 Male, age 18, unknown 177.3
2272 Male, age 74, both hemispheres 158.2
2140 Male, age 76, both hemispheres 156.1
Pretectal area
nTPM: 166.5
2407 Male, age 75, both hemispheres 180.4
2316 Male, age 76, right hemisphere 179.4
1815 Male, age 53, unknown 178.6
1817 Female, age 42, unknown 178.1
2825 Male, age 18, unknown 174.2
2007 Male, age 72, unknown 172.4
1944 Female, age 72, unknown 156.4
2667 Female, age 75, unknown 156.0
1816 Male, age 51, unknown 155.3
2224 Female, age 72, unknown 151.4
2273 Male, age 74, both hemispheres 149.5
Red nucleus
nTPM: 216.9
2588 Male, age 74, left hemisphere 260.7
1865 Male, age 51, unknown 228.5
1904 Male, age 53, unknown 227.4
2503 Female, age 72, unknown 226.0
2227 Male, age 72, unknown 221.9
2769 Male, age 72, unknown 219.4
1954 Female, age 42, unknown 207.0
1821 Female, age 72, unknown 206.3
2584 Male, age 75, left hemisphere 204.4
2823 Male, age 76, right hemisphere 204.1
2725 Female, age 75, unknown 201.5
2785 Male, age 18, unknown 195.5
Substantia nigra
nTPM: 177.5
2665 Male, age 74, both hemispheres 198.1
2590 Female, age 75, unknown 188.9
2583 Male, age 75, right hemisphere 187.0
1851 Male, age 51, unknown 180.6
2699 Male, age 18, unknown 178.9
1889 Female, age 72, unknown 176.6
2409 Female, age 72, unknown 174.8
1941 Male, age 53, unknown 171.5
1916 Female, age 42, unknown 161.2
2241 Male, age 72, unknown 157.1
Superior colliculus
nTPM: 182.8
1995 Male, age 72, unknown 204.2
2587 Male, age 74, left hemisphere 196.4
2664 Male, age 75, both hemispheres 191.9
1839 Male, age 51, unknown 188.6
2668 Female, age 75, unknown 184.6
1913 Female, age 42, unknown 181.8
1895 Male, age 76, right hemisphere 180.5
1796 Male, age 53, unknown 171.1
2261 Male, age 18, unknown 170.9
2087 Female, age 72, unknown 158.3
Ventral tegmental area
nTPM: 172.9
2410 Female, age 72, unknown 186.9
2223 Female, age 72, unknown 184.1
1942 Male, age 51, unknown 172.6
1915 Female, age 42, unknown 169.5
2021 Male, age 53, unknown 167.8
2218 Male, age 76, both hemispheres 156.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 230.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 230.7
Samples: 139

Max nTPM: 753.5
Min nTPM: 54.2
Std nTPM: 129.9
Median nTPM: 189.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 753.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 703.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 687.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 629.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 499.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 482.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 467.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 463.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 460.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 438.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 433.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 182.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 182.4
FF:10158-103A5 76 years, female 182.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 58.1
Pig sample Sample description nTPM
Midbrain
nTPM: 58.1
Samples: 4

Max nTPM: 125.4
Min nTPM: 28.3
Sample A Female 125.4
Sample B Female 46.4
Sample C Male 28.3
Sample D Male 32.2
Periaqueductal gray
nTPM: 32.6
Samples: 3

Max nTPM: 35.8
Min nTPM: 28.7
Sample B Female 35.8
Sample C Male 28.7
Sample D Male 33.4
Substantia nigra
nTPM: 50.0
Samples: 4

Max nTPM: 70.5
Min nTPM: 38.3
Sample A Female 50.4
Sample B Female 38.3
Sample C Male 40.9
Sample D Male 70.5
Superior colliculi
nTPM: 43.3
Samples: 4

Max nTPM: 51.6
Min nTPM: 38.0
Sample A Female 44.9
Sample B Female 38.6
Sample C Male 38.0
Sample D Male 51.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 46.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 46.3
Samples: 4

Max nTPM: 52.7
Min nTPM: 39.8
Sample A Male 52.7
Sample B Male 46.2
Sample C Female 39.8
Sample D Female 46.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
69735765 Antisense, RP_050503_03_E03, Mouse strain C57BL/6J (56 days, male) 0.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.