BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:31.5 nTPM
HPA:31.5 nTPM
GTEx:35.8 nTPM
FANTOM5:200.0 Scaled Tags Per Million
Pig:47.1 nTPM
Mouse:41.8 nTPM
Allen mouse:7.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA001897
Glial cells High
Neuronal cells High


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 31.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 29.7
2846 Female, age 79, unknown 31.7
2481 Female, age 94, left hemisphere 31.6
1854 Male, age 80, left hemisphere 30.8
2288 Male, age 75, left hemisphere 30.7
1781 Male, age 74, unknown 30.1
1857 Female, age 85, left hemisphere 29.2
2290 Female, age 72, unknown 29.2
2289 Male, age 61, right hemisphere 23.9
Claustrum
nTPM: 29.2
2196 Female, age 79, unknown 34.8
2645 Female, age 72, unknown 31.6
2292 Female, age 85, both hemispheres 31.5
2284 Female, age 91, both hemispheres 29.8
2568 Male, age 61, both hemispheres 29.1
1956 Male, age 74, unknown 27.6
2198 Male, age 80, both hemispheres 26.6
2491 Male, age 75, both hemispheres 26.5
2392 Female, age 94, both hemispheres 25.2
Globus pallidus, externus
nTPM: 31.5
1996 Male, age 80, right hemisphere 34.5
2646 Male, age 61, right hemisphere 32.8
2567 Female, age 72, unknown 30.9
2772 Female, age 79, unknown 29.6
2395 Male, age 75, both hemispheres 29.5
Globus pallidus, internus
nTPM: 31.2
2778 Female, age 91, both hemispheres 34.6
2287 Male, age 75, right hemisphere 34.2
1818 Male, age 74, unknown 32.3
2111 Female, age 85, right hemisphere 31.1
2037 Male, age 80, right hemisphere 30.7
2566 Female, age 72, unknown 28.7
2483 Female, age 94, right hemisphere 27.1
Nucleus accumbens
nTPM: 30.6
2698 Female, age 72, unknown 34.5
1783 Male, age 74, unknown 33.7
1806 Female, age 85, left hemisphere 33.3
1856 Female, age 91, right hemisphere 32.1
2391 Female, age 94, left hemisphere 31.9
2732 Male, age 80, right hemisphere 29.2
2286 Male, age 75, left hemisphere 28.2
2824 Male, age 61, right hemisphere 21.6
Nucleus basalis of Meynert
nTPM: 27.6
2569 Male, age 61, both hemispheres 30.3
2821 Male, age 75, both hemispheres 29.4
2393 Male, age 80, right hemisphere 26.1
2484 Female, age 94, left hemisphere 24.5
Nucleus of the diagonal band
nTPM: 29.6
1979 Male, age 74, unknown 37.2
1812 Female, age 91, both hemispheres 31.2
2195 Female, age 85, both hemispheres 29.9
2775 Male, age 80, right hemisphere 28.0
2029 Male, age 61, right hemisphere 21.5
Olfactory tubercle
nTPM: 28.5
1846 Male, age 80, right hemisphere 30.3
1998 Female, age 91, both hemispheres 28.2
2487 Female, age 94, left hemisphere 28.1
2856 Male, age 75, right hemisphere 27.5
Putamen
nTPM: 29.8
2647 Male, age 75, left hemisphere 33.6
2489 Female, age 72, unknown 31.5
1829 Male, age 74, unknown 29.8
1838 Male, age 80, right hemisphere 29.5
1937 Female, age 91, right hemisphere 28.4
2482 Female, age 94, left hemisphere 28.2
2466 Female, age 79, unknown 27.8
Septal nuclei
nTPM: 29.7
2629 Female, age 94, right hemisphere 35.8
2199 Male, age 80, right hemisphere 32.6
2059 Female, age 85, both hemispheres 31.6
1960 Male, age 74, unknown 28.2
2031 Female, age 72, unknown 27.4
2009 Female, age 91, both hemispheres 27.3
2394 Male, age 61, left hemisphere 25.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 35.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 34.9
Samples: 246

Max nTPM: 44.5
Min nTPM: 24.8
Std nTPM: 4.1
Median nTPM: 35.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 44.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 44.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 44.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 44.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 43.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 43.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 43.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 43.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 43.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 42.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 42.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 35.8
Samples: 246

Max nTPM: 58.8
Min nTPM: 19.0
Std nTPM: 5.7
Median nTPM: 35.6
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 58.8
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 54.2
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 49.3
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 48.2
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 47.3
GTEX-13SLX-0011-R6a-SM-5PNX4 50-59 years, female 47.0
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 46.8
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 46.2
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 46.1
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 45.8
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 45.2
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Brain - Putamen (basal ganglia)
Average nTPM: 34.2
Samples: 205

Max nTPM: 56.6
Min nTPM: 23.1
Std nTPM: 4.6
Median nTPM: 34.0
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 56.6
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 54.9
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 47.5
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 45.5
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 43.8
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 43.8
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 43.4
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 43.2
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 43.1
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 42.3
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 42.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 200.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 152.5
FF:10164-103B2 76 years, female 152.5
Globus pallidus
Scaled Tags Per Million: 200.0
FF:10175-103C4 60 years, female 231.2
FF:10161-103A8 76 years, female 168.7
Nucleus accumbens
Scaled Tags Per Million: 162.6
FF:10037-101F1 23-56 years, mixed 162.6
Putamen
Scaled Tags Per Million: 154.2
FF:10176-103C5 60 years, female 154.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 47.1
Pig sample Sample description nTPM
Caudate
nTPM: 43.7
Samples: 4

Max nTPM: 47.8
Min nTPM: 40.3
Sample A Female 40.7
Sample B Female 45.9
Sample C Male 47.8
Sample D Male 40.3
Putamen
nTPM: 45.6
Samples: 4

Max nTPM: 51.6
Min nTPM: 38.2
Sample A Female 45.1
Sample B Female 38.2
Sample C Male 51.6
Sample D Male 47.6
Septum
nTPM: 47.1
Samples: 4

Max nTPM: 49.0
Min nTPM: 45.2
Sample A Female 48.8
Sample B Female 45.4
Sample C Male 49.0
Sample D Male 45.2
Ventral pallidum
nTPM: 44.4
Samples: 4

Max nTPM: 47.2
Min nTPM: 39.1
Sample A Female 39.1
Sample B Female 45.6
Sample C Male 45.7
Sample D Male 47.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 41.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 39.6
Samples: 4

Max nTPM: 40.2
Min nTPM: 38.0
Sample A Male 40.2
Sample B Male 40.2
Sample C Female 40.1
Sample D Female 38.0
Septum
nTPM: 41.8
Samples: 4

Max nTPM: 45.0
Min nTPM: 38.8
Sample A Male 42.9
Sample B Male 40.5
Sample C Female 38.8
Sample D Female 45.0
Ventral forebrain
nTPM: 41.5
Samples: 4

Max nTPM: 44.5
Min nTPM: 37.7
Sample A Male 41.5
Sample B Male 42.3
Sample C Female 37.7
Sample D Female 44.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 7.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 7.1
68924679 Antisense, RP_050303_02_G11, Mouse strain C57BL/6J (56 days, male) 10.8
74425549 Antisense, RP_051214_02_G10, Mouse strain C57BL/6J (56 days, male) 8.7
70919704 Antisense, RP_050713_01_H07, Mouse strain C57BL/6J (56 days, male) 2.0
Pallidum
Expression energy: 6.6
68924679 Antisense, RP_050303_02_G11, Mouse strain C57BL/6J (56 days, male) 10.9
74425549 Antisense, RP_051214_02_G10, Mouse strain C57BL/6J (56 days, male) 7.6
70919704 Antisense, RP_050713_01_H07, Mouse strain C57BL/6J (56 days, male) 1.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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