MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:42.9 nTPM
HPA:42.9 nTPM
GTEx:49.5 nTPM
FANTOM5:57.2 Scaled Tags Per Million
Pig:38.0 nTPM
Mouse:60.8 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.9
1870 Female, age 42, unknown 44.2
1830 Male, age 51, unknown 43.0
1833 Male, age 53, unknown 41.8
2666 Male, age 74, left hemisphere 41.8
2411 Female, age 72, unknown 41.7
2019 Male, age 18, unknown 39.1
2586 Male, age 75, left hemisphere 37.6
2828 Female, age 72, unknown 37.2
2219 Male, age 76, both hemispheres 36.7
1827 Male, age 72, unknown 36.3
Dorsal raphe nucleus
nTPM: 37.2
2750 Male, age 76, both hemispheres 41.3
2016 Female, age 72, unknown 37.2
1828 Male, age 53, unknown 37.0
2047 Male, age 72, unknown 35.9
2298 Female, age 72, unknown 34.3
Inferior colliculus
nTPM: 36.4
1890 Male, age 53, unknown 37.8
1848 Female, age 42, unknown 37.4
2849 Male, age 72, unknown 35.2
2097 Female, age 72, unknown 35.0
Median raphe nucleus
nTPM: 38.3
2220 Male, age 76, midline 38.3
Pedunculopontine tegmental nucleus
nTPM: 39.4
2338 Male, age 61, both hemispheres 42.4
2334 Male, age 80, both hemispheres 39.7
1921 Female, age 85, both hemispheres 36.1
Periaquaductal grey, anterior
nTPM: 35.8
1947 Male, age 18, unknown 37.1
2502 Female, age 75, unknown 37.1
1795 Male, age 51, unknown 33.1
Periaquaductal grey, dorsal
nTPM: 35.6
1831 Male, age 72, unknown 38.0
2464 Female, age 72, unknown 35.7
2850 Male, age 76, both hemispheres 35.0
1840 Male, age 53, unknown 33.8
Periaquaductal grey, lateral
nTPM: 33.5
2053 Male, age 18, unknown 34.5
2272 Male, age 74, both hemispheres 33.0
2140 Male, age 76, both hemispheres 32.8
Pretectal area
nTPM: 35.5
1815 Male, age 53, unknown 38.8
2316 Male, age 76, right hemisphere 37.5
2407 Male, age 75, both hemispheres 37.2
2007 Male, age 72, unknown 36.4
2825 Male, age 18, unknown 36.4
1817 Female, age 42, unknown 35.8
1944 Female, age 72, unknown 34.4
2224 Female, age 72, unknown 34.3
1816 Male, age 51, unknown 33.7
2667 Female, age 75, unknown 33.5
2273 Male, age 74, both hemispheres 32.7
Red nucleus
nTPM: 42.9
1821 Female, age 72, unknown 45.6
1865 Male, age 51, unknown 45.5
2503 Female, age 72, unknown 45.3
1904 Male, age 53, unknown 44.7
2823 Male, age 76, right hemisphere 44.1
1954 Female, age 42, unknown 43.6
2588 Male, age 74, left hemisphere 43.1
2227 Male, age 72, unknown 42.5
2769 Male, age 72, unknown 41.7
2785 Male, age 18, unknown 41.5
2725 Female, age 75, unknown 39.9
2584 Male, age 75, left hemisphere 37.0
Substantia nigra
nTPM: 38.3
1851 Male, age 51, unknown 40.2
2699 Male, age 18, unknown 40.1
2409 Female, age 72, unknown 39.3
2590 Female, age 75, unknown 38.9
2665 Male, age 74, both hemispheres 38.7
1889 Female, age 72, unknown 38.5
2241 Male, age 72, unknown 38.0
2583 Male, age 75, right hemisphere 37.3
1941 Male, age 53, unknown 36.1
1916 Female, age 42, unknown 35.8
Superior colliculus
nTPM: 37.8
1913 Female, age 42, unknown 42.4
1995 Male, age 72, unknown 41.2
2587 Male, age 74, left hemisphere 40.3
2668 Female, age 75, unknown 40.2
1839 Male, age 51, unknown 38.3
1895 Male, age 76, right hemisphere 38.3
2664 Male, age 75, both hemispheres 35.3
1796 Male, age 53, unknown 34.2
2087 Female, age 72, unknown 34.2
2261 Male, age 18, unknown 33.8
Ventral tegmental area
nTPM: 39.1
2223 Female, age 72, unknown 41.4
2410 Female, age 72, unknown 40.5
2021 Male, age 53, unknown 38.8
1915 Female, age 42, unknown 38.4
2218 Male, age 76, both hemispheres 38.4
1942 Male, age 51, unknown 37.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 49.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 49.5
Samples: 139

Max nTPM: 104.7
Min nTPM: 23.5
Std nTPM: 16.8
Median nTPM: 46.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 104.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 103.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 97.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 96.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 90.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 83.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 83.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 82.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 81.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 80.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 80.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 57.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 57.2
FF:10158-103A5 76 years, female 57.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 38.0
Pig sample Sample description nTPM
Midbrain
nTPM: 35.0
Samples: 4

Max nTPM: 48.8
Min nTPM: 25.6
Sample A Female 48.8
Sample B Female 39.7
Sample C Male 25.9
Sample D Male 25.6
Periaqueductal gray
nTPM: 29.5
Samples: 3

Max nTPM: 31.2
Min nTPM: 28.0
Sample B Female 29.2
Sample C Male 28.0
Sample D Male 31.2
Substantia nigra
nTPM: 38.0
Samples: 4

Max nTPM: 43.3
Min nTPM: 35.4
Sample A Female 43.3
Sample B Female 36.1
Sample C Male 37.1
Sample D Male 35.4
Superior colliculi
nTPM: 31.5
Samples: 4

Max nTPM: 33.0
Min nTPM: 30.0
Sample A Female 33.0
Sample B Female 30.0
Sample C Male 31.2
Sample D Male 31.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 60.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 60.8
Samples: 4

Max nTPM: 65.8
Min nTPM: 57.1
Sample A Male 57.1
Sample B Male 59.0
Sample C Female 65.8
Sample D Female 61.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
69117026 Antisense, RP_050321_01_F02, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.