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RNASE1
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  • RNASE1
BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:351.3 nTPM
HPA:351.3 nTPM
GTEx:439.8 nTPM
FANTOM5:223.1 Scaled Tags Per Million
Pig:333.5 nTPM
Mouse:2.6 nTPM
Allen mouse:0.4 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA001140
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 351.3
Sample id Sample description nTPM
Hippocampus
nTPM: 312.2
2529 Female, age 94, left hemisphere 326.8
1911 Female, age 85, right hemisphere 324.2
2621 Female, age 67, right hemisphere 322.4
1898 Male, age 80, left hemisphere 310.8
1855 Male, age 76, left hemisphere 307.6
2148 Female, age 91, left hemisphere 281.4
Dentate gyrus
nTPM: 311.4
2530 Female, age 94, left hemisphere 371.3
2528 Male, age 74, both hemispheres 325.0
2010 Male, age 76, both hemispheres 312.7
2246 Female, age 85, both hemispheres 296.1
2531 Female, age 67, both hemispheres 290.7
1927 Female, age 91, both hemispheres 272.5
Entorhinal gyrus
nTPM: 313.9
2117 Female, age 91, right hemisphere 389.7
2764 Male, age 80, right hemisphere 336.3
1938 Female, age 85, left hemisphere 299.1
2686 Male, age 75, right hemisphere 292.0
2613 Female, age 94, left hemisphere 285.8
1787 Male, age 76, left hemisphere 280.4
Hippocampus, CA1
nTPM: 285.4
2527 Male, age 74, both hemispheres 319.9
1873 Female, age 85, both hemispheres 297.4
2082 Female, age 91, right hemisphere 284.9
2749 Male, age 80, left hemisphere 280.3
2045 Male, age 76, both hemispheres 244.5
Hippocampus, CA2
nTPM: 316.8
1963 Male, age 80, left hemisphere 349.0
2249 Male, age 74, both hemispheres 348.7
2437 Female, age 94, left hemisphere 340.2
1940 Female, age 85, left hemisphere 300.1
2113 Female, age 91, right hemisphere 295.3
1892 Male, age 76, both hemispheres 267.4
Hippocampus, CA3
nTPM: 286.5
1891 Female, age 85, both hemispheres 344.1
2436 Male, age 74, both hemispheres 295.8
1867 Male, age 76, both hemispheres 293.3
2137 Male, age 80, left hemisphere 264.7
2861 Female, age 67, both hemispheres 263.1
2620 Female, age 94, left hemisphere 257.9
Parahippocampal cortex
nTPM: 294.0
2532 Female, age 72, left hemisphere 336.7
2692 Male, age 74, both hemispheres 330.2
1990 Female, age 91, right hemisphere 306.7
1850 Male, age 80, both hemispheres 305.3
2018 Male, age 76, both hemispheres 292.4
2245 Female, age 91, both hemispheres 292.2
1933 Female, age 85, both hemispheres 287.1
2693 Female, age 94, both hemispheres 271.4
2250 Female, age 67, right hemisphere 268.1
2622 Female, age 67, right hemisphere 249.6
Perirhinal gyrus
nTPM: 269.7
2521 Female, age 94, right hemisphere 283.4
1794 Male, age 80, right hemisphere 272.2
2848 Male, age 76, right hemisphere 271.4
1847 Female, age 91, left hemisphere 262.9
1841 Female, age 85, right hemisphere 258.9
Subiculum
nTPM: 351.3
2042 Male, age 76, both hemispheres 387.2
2438 Female, age 94, left hemisphere 381.6
1901 Male, age 80, both hemispheres 364.6
1977 Female, age 85, both hemispheres 336.9
2619 Male, age 74, both hemispheres 336.1
2729 Female, age 91, right hemisphere 301.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 439.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 439.8
Samples: 197

Max nTPM: 1312.4
Min nTPM: 45.4
Std nTPM: 238.7
Median nTPM: 410.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 1312.4
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 1156.5
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 1131.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 1048.4
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 1041.3
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 1028.5
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 1024.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 985.0
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 963.8
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 891.8
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 886.1
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 876.5
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 872.7
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 868.6
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 866.8
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 853.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 847.4
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 803.0
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 797.8
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 780.2
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 778.3
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 777.0
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 775.5
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 766.5
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 750.3
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 737.6
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 736.3
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 708.1
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 680.3
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 674.9
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 669.2
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 640.3
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 639.5
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 624.0
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 611.3
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 609.9
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 608.1
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 606.7
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 603.1
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 601.7
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 599.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 596.8
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 593.2
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 591.8
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 588.2
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 582.9
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 577.4
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 571.5
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 564.1
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 563.0
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 557.7
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 556.8
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 543.4
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 541.4
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 540.1
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 531.9
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 530.9
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 525.8
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 523.6
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 518.1
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 514.6
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 509.8
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 503.2
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 501.7
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 500.8
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 500.0
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 494.5
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 492.6
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 492.2
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 487.7
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 485.1
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 481.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 480.5
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 479.0
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 475.6
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 474.4
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 467.8
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 462.9
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 458.8
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 454.5
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 447.1
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 444.4
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 443.5
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 439.8
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 437.3
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 436.8
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 433.3
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 432.2
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 431.3
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 428.1
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 427.3
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 424.2
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 419.1
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 419.1
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 418.1
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 415.3
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 413.3
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 411.4
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 410.3
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 404.6
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 404.3
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 399.9
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 397.2
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 393.5
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 393.5
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 389.4
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 381.3
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 379.5
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 368.9
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 367.6
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 362.5
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 362.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 354.8
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 354.7
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 351.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 349.6
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 345.5
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 339.8
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 336.9
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 333.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 331.1
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 320.8
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 313.9
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 310.5
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 308.4
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 306.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 305.2
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 304.7
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 304.1
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 297.2
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 293.7
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 293.6
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 292.0
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 289.5
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 288.3
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 285.2
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 282.9
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 278.8
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 275.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 275.6
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 271.2
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 269.6
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 269.1
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 267.6
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 265.5
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 262.4
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 262.2
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 253.9
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 252.7
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 252.6
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 249.3
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 244.6
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 238.4
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 233.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 233.0
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 232.7
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 231.7
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 231.2
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 227.5
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 225.9
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 218.4
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 216.4
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 214.6
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 210.5
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 209.7
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 207.8
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 205.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 204.5
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 203.4
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 198.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 195.4
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 194.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 194.0
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 191.7
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 190.5
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 185.9
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 184.0
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 177.1
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 176.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 176.3
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 175.4
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 173.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 171.0
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 168.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 167.2
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 154.4
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 152.3
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 149.1
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 146.6
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 146.6
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 137.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 133.3
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 110.6
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 101.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 85.7
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 82.1
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 45.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 223.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 223.1
FF:10153-102I9 76 years, female 247.4
FF:10169-103B7 60 years, female 198.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 333.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 231.9
Samples: 4

Max nTPM: 271.1
Min nTPM: 191.4
Sample A Female 263.9
Sample B Female 201.0
Sample C Male 271.1
Sample D Male 191.4
Entorhinal cortex
nTPM: 237.1
Samples: 4

Max nTPM: 326.5
Min nTPM: 174.3
Sample A Female 194.5
Sample B Female 253.0
Sample C Male 326.5
Sample D Male 174.3
Subiculum
nTPM: 333.5
Samples: 4

Max nTPM: 364.0
Min nTPM: 291.8
Sample A Female 364.0
Sample B Female 351.0
Sample C Male 327.1
Sample D Male 291.8
Ventral hippocampus
nTPM: 286.3
Samples: 4

Max nTPM: 417.8
Min nTPM: 187.4
Sample A Female 257.3
Sample B Female 282.8
Sample C Male 417.8
Sample D Male 187.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 2.5
Samples: 4

Max nTPM: 4.1
Min nTPM: 1.1
Sample A Male 2.3
Sample B Male 1.1
Sample C Female 4.1
Sample D Female 2.3
Hippocampal formation
nTPM: 2.6
Samples: 4

Max nTPM: 3.4
Min nTPM: 1.8
Sample A Male 3.4
Sample B Male 1.8
Sample C Female 2.4
Sample D Female 2.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.4
68522503 Antisense, RP_050118_02_B09, Mouse strain C57BL/6J (56 days, male) 0.4

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