MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:158.7 nTPM
HPA:158.7 nTPM
GTEx:222.6 nTPM
FANTOM5:116.0 Scaled Tags Per Million
Pig:82.6 nTPM
Mouse:228.5 nTPM
Allen mouse:7.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 158.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 153.3
1827 Male, age 72, unknown 160.3
2666 Male, age 74, left hemisphere 158.0
1870 Female, age 42, unknown 154.9
2411 Female, age 72, unknown 154.0
2019 Male, age 18, unknown 152.2
2828 Female, age 72, unknown 151.9
2219 Male, age 76, both hemispheres 151.7
1833 Male, age 53, unknown 150.8
2586 Male, age 75, left hemisphere 150.5
1830 Male, age 51, unknown 148.4
Dorsal raphe nucleus
nTPM: 153.7
2298 Female, age 72, unknown 157.6
1828 Male, age 53, unknown 154.5
2750 Male, age 76, both hemispheres 154.0
2047 Male, age 72, unknown 153.8
2016 Female, age 72, unknown 148.4
Inferior colliculus
nTPM: 155.7
2097 Female, age 72, unknown 159.4
2849 Male, age 72, unknown 155.8
1890 Male, age 53, unknown 154.1
1848 Female, age 42, unknown 153.4
Median raphe nucleus
nTPM: 158.2
2220 Male, age 76, midline 158.2
Pedunculopontine tegmental nucleus
nTPM: 158.7
2338 Male, age 61, both hemispheres 160.6
2334 Male, age 80, both hemispheres 159.6
1921 Female, age 85, both hemispheres 155.9
Periaquaductal grey, anterior
nTPM: 153.8
1947 Male, age 18, unknown 156.9
1795 Male, age 51, unknown 154.3
2502 Female, age 75, unknown 150.1
Periaquaductal grey, dorsal
nTPM: 151.2
2850 Male, age 76, both hemispheres 153.3
1831 Male, age 72, unknown 152.2
1840 Male, age 53, unknown 152.1
2464 Female, age 72, unknown 147.2
Periaquaductal grey, lateral
nTPM: 151.8
2053 Male, age 18, unknown 152.7
2272 Male, age 74, both hemispheres 152.1
2140 Male, age 76, both hemispheres 150.5
Pretectal area
nTPM: 158.1
1816 Male, age 51, unknown 168.1
1944 Female, age 72, unknown 164.2
1817 Female, age 42, unknown 164.1
2007 Male, age 72, unknown 162.5
1815 Male, age 53, unknown 161.3
2667 Female, age 75, unknown 158.3
2224 Female, age 72, unknown 155.0
2825 Male, age 18, unknown 154.2
2407 Male, age 75, both hemispheres 152.6
2273 Male, age 74, both hemispheres 150.8
2316 Male, age 76, right hemisphere 148.1
Red nucleus
nTPM: 152.2
1821 Female, age 72, unknown 158.8
2725 Female, age 75, unknown 158.0
2785 Male, age 18, unknown 152.7
1954 Female, age 42, unknown 152.5
1865 Male, age 51, unknown 152.3
2823 Male, age 76, right hemisphere 151.7
2503 Female, age 72, unknown 151.5
2584 Male, age 75, left hemisphere 150.8
2769 Male, age 72, unknown 150.3
1904 Male, age 53, unknown 149.7
2227 Male, age 72, unknown 149.4
2588 Male, age 74, left hemisphere 148.6
Substantia nigra
nTPM: 158.0
1916 Female, age 42, unknown 164.9
1889 Female, age 72, unknown 162.7
1941 Male, age 53, unknown 161.8
2665 Male, age 74, both hemispheres 161.1
1851 Male, age 51, unknown 160.1
2699 Male, age 18, unknown 155.3
2241 Male, age 72, unknown 154.8
2409 Female, age 72, unknown 154.1
2590 Female, age 75, unknown 152.6
2583 Male, age 75, right hemisphere 152.3
Superior colliculus
nTPM: 153.8
2087 Female, age 72, unknown 157.3
2668 Female, age 75, unknown 155.8
1796 Male, age 53, unknown 155.5
2587 Male, age 74, left hemisphere 155.4
1895 Male, age 76, right hemisphere 155.3
2261 Male, age 18, unknown 154.9
1913 Female, age 42, unknown 153.0
1839 Male, age 51, unknown 151.1
2664 Male, age 75, both hemispheres 150.1
1995 Male, age 72, unknown 149.2
Ventral tegmental area
nTPM: 155.9
2218 Male, age 76, both hemispheres 160.4
1915 Female, age 42, unknown 159.1
2410 Female, age 72, unknown 157.4
2223 Female, age 72, unknown 154.2
1942 Male, age 51, unknown 152.8
2021 Male, age 53, unknown 151.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 222.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 222.6
Samples: 139

Max nTPM: 437.7
Min nTPM: 126.8
Std nTPM: 61.3
Median nTPM: 207.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 437.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 428.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 407.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 398.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 374.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 358.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 350.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 338.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 335.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 334.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 316.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 116.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 116.0
FF:10158-103A5 76 years, female 116.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 82.6
Pig sample Sample description nTPM
Midbrain
nTPM: 78.1
Samples: 4

Max nTPM: 80.4
Min nTPM: 74.4
Sample A Female 80.4
Sample B Female 74.4
Sample C Male 79.2
Sample D Male 78.2
Periaqueductal gray
nTPM: 60.6
Samples: 3

Max nTPM: 73.1
Min nTPM: 51.6
Sample B Female 57.1
Sample C Male 73.1
Sample D Male 51.6
Substantia nigra
nTPM: 75.5
Samples: 4

Max nTPM: 108.7
Min nTPM: 49.2
Sample A Female 108.7
Sample B Female 62.5
Sample C Male 81.7
Sample D Male 49.2
Superior colliculi
nTPM: 82.6
Samples: 4

Max nTPM: 106.4
Min nTPM: 67.9
Sample A Female 106.4
Sample B Female 67.9
Sample C Male 87.6
Sample D Male 68.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 228.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 228.5
Samples: 4

Max nTPM: 238.5
Min nTPM: 218.5
Sample A Male 235.4
Sample B Male 221.4
Sample C Female 218.5
Sample D Female 238.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.3
393259 Antisense, RP_040809_01_B01, Mouse strain C57BL/6J (56 days, male) 7.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.