MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:218.7 nTPM
HPA:218.7 nTPM
GTEx:199.9 nTPM
FANTOM5:182.4 Scaled Tags Per Million
Pig:62.6 nTPM
Mouse:140.4 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 218.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 205.7
1870 Female, age 42, unknown 220.1
2019 Male, age 18, unknown 214.1
1833 Male, age 53, unknown 210.6
2411 Female, age 72, unknown 210.4
2828 Female, age 72, unknown 208.3
1830 Male, age 51, unknown 208.2
1827 Male, age 72, unknown 201.8
2666 Male, age 74, left hemisphere 198.1
2219 Male, age 76, both hemispheres 196.1
2586 Male, age 75, left hemisphere 188.8
Dorsal raphe nucleus
nTPM: 218.7
2298 Female, age 72, unknown 224.3
2750 Male, age 76, both hemispheres 221.8
2016 Female, age 72, unknown 216.8
1828 Male, age 53, unknown 216.6
2047 Male, age 72, unknown 213.9
Inferior colliculus
nTPM: 202.1
2097 Female, age 72, unknown 204.0
1848 Female, age 42, unknown 202.7
1890 Male, age 53, unknown 201.9
2849 Male, age 72, unknown 199.8
Median raphe nucleus
nTPM: 215.8
2220 Male, age 76, midline 215.8
Pedunculopontine tegmental nucleus
nTPM: 215.4
2338 Male, age 61, both hemispheres 219.2
2334 Male, age 80, both hemispheres 218.2
1921 Female, age 85, both hemispheres 208.6
Periaquaductal grey, anterior
nTPM: 201.9
2502 Female, age 75, unknown 202.5
1795 Male, age 51, unknown 201.6
1947 Male, age 18, unknown 201.4
Periaquaductal grey, dorsal
nTPM: 207.4
2850 Male, age 76, both hemispheres 221.2
1831 Male, age 72, unknown 206.4
1840 Male, age 53, unknown 203.4
2464 Female, age 72, unknown 198.7
Periaquaductal grey, lateral
nTPM: 210.0
2272 Male, age 74, both hemispheres 212.0
2140 Male, age 76, both hemispheres 209.8
2053 Male, age 18, unknown 208.3
Pretectal area
nTPM: 210.2
2273 Male, age 74, both hemispheres 221.5
2667 Female, age 75, unknown 217.4
1817 Female, age 42, unknown 215.6
2224 Female, age 72, unknown 215.4
1815 Male, age 53, unknown 213.4
2316 Male, age 76, right hemisphere 212.7
2407 Male, age 75, both hemispheres 206.5
2007 Male, age 72, unknown 204.0
2825 Male, age 18, unknown 203.4
1944 Female, age 72, unknown 202.7
1816 Male, age 51, unknown 200.0
Red nucleus
nTPM: 214.4
1821 Female, age 72, unknown 231.4
1865 Male, age 51, unknown 222.1
1904 Male, age 53, unknown 221.6
1954 Female, age 42, unknown 221.5
2823 Male, age 76, right hemisphere 220.2
2227 Male, age 72, unknown 216.4
2769 Male, age 72, unknown 215.1
2503 Female, age 72, unknown 214.2
2785 Male, age 18, unknown 213.2
2725 Female, age 75, unknown 205.7
2588 Male, age 74, left hemisphere 196.8
2584 Male, age 75, left hemisphere 194.0
Substantia nigra
nTPM: 207.2
1851 Male, age 51, unknown 215.8
1889 Female, age 72, unknown 212.9
2699 Male, age 18, unknown 211.4
1916 Female, age 42, unknown 211.3
2409 Female, age 72, unknown 207.6
1941 Male, age 53, unknown 205.4
2241 Male, age 72, unknown 205.1
2590 Female, age 75, unknown 204.5
2665 Male, age 74, both hemispheres 200.5
2583 Male, age 75, right hemisphere 197.7
Superior colliculus
nTPM: 207.5
1995 Male, age 72, unknown 222.3
2587 Male, age 74, left hemisphere 219.4
1913 Female, age 42, unknown 217.3
2668 Female, age 75, unknown 209.1
1895 Male, age 76, right hemisphere 204.8
1839 Male, age 51, unknown 203.2
2261 Male, age 18, unknown 202.5
2087 Female, age 72, unknown 200.9
1796 Male, age 53, unknown 200.7
2664 Male, age 75, both hemispheres 194.6
Ventral tegmental area
nTPM: 213.7
2223 Female, age 72, unknown 220.1
2410 Female, age 72, unknown 218.5
2218 Male, age 76, both hemispheres 213.0
1915 Female, age 42, unknown 211.5
2021 Male, age 53, unknown 210.8
1942 Male, age 51, unknown 208.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 199.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 199.9
Samples: 139

Max nTPM: 430.5
Min nTPM: 123.7
Std nTPM: 51.7
Median nTPM: 184.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 430.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 365.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 308.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 307.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 307.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 302.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 297.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 290.7
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 282.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 279.8
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 279.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 182.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 182.4
FF:10158-103A5 76 years, female 182.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 62.6
Pig sample Sample description nTPM
Midbrain
nTPM: 61.1
Samples: 4

Max nTPM: 85.2
Min nTPM: 40.7
Sample A Female 85.2
Sample B Female 67.2
Sample C Male 40.7
Sample D Male 51.3
Periaqueductal gray
nTPM: 52.6
Samples: 3

Max nTPM: 58.0
Min nTPM: 47.8
Sample B Female 47.8
Sample C Male 51.9
Sample D Male 58.0
Substantia nigra
nTPM: 56.5
Samples: 4

Max nTPM: 74.2
Min nTPM: 48.3
Sample A Female 74.2
Sample B Female 48.3
Sample C Male 48.4
Sample D Male 55.1
Superior colliculi
nTPM: 62.7
Samples: 4

Max nTPM: 72.0
Min nTPM: 56.1
Sample A Female 72.0
Sample B Female 56.1
Sample C Male 66.3
Sample D Male 56.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 140.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 140.4
Samples: 4

Max nTPM: 143.2
Min nTPM: 137.0
Sample A Male 138.3
Sample B Male 137.0
Sample C Female 143.2
Sample D Female 143.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
69838004 Antisense, RP_050224_01_E09, Mouse strain C57BL/6J (56 days, male) 3.1
74819345 Antisense, RP_060315_02_E12, Mouse strain C57BL/6J (56 days, male) 1.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.