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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:26.3 nTPM
GTEx:29.2 nTPM
FANTOM5:61.1 Scaled Tags Per Million
Pig:5.4 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 26.3
Sample id Sample description nTPM
Putamen
nTPM: 26.3
1838 Male, age 80, right hemisphere 30.2
2466 Female, age 79, unknown 30.0
1937 Female, age 91, right hemisphere 29.4
1829 Male, age 74, unknown 27.4
2482 Female, age 94, left hemisphere 25.5
2489 Female, age 72, unknown 21.4
2647 Male, age 75, left hemisphere 20.0

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 29.2
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 29.2
Samples: 205

Max nTPM: 54.5
Min nTPM: 8.5
Std nTPM: 9.0
Median nTPM: 29.4
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 54.5
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 48.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 48.3
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 48.0
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 47.8
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 47.6
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 47.4
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 46.8
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 46.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 45.7
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 45.0
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 44.5
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 44.3
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 43.9
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 43.6
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 43.3
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 42.0
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 42.0
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 41.9
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 41.7
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 41.5
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 41.3
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 41.1
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 40.8
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 40.7
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 40.4
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 40.0
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 39.7
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 39.7
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 39.4
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 39.2
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 38.8
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 38.6
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 38.3
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 38.2
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 38.1
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 38.1
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 37.6
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 37.4
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 37.0
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 36.9
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 36.3
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 36.0
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 35.9
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 35.6
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 35.4
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 35.3
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 35.3
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 35.1
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 35.0
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 34.8
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 34.6
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 34.5
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 34.5
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 34.5
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 34.3
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 34.3
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 34.3
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 34.3
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 34.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 33.7
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 33.7
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 33.6
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 33.3
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 33.3
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 33.1
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 32.9
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 32.8
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 32.8
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 32.7
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 32.5
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 32.3
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 32.3
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 32.2
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 32.2
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 32.1
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 32.0
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 31.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 31.8
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 31.6
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 31.4
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 31.3
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 31.1
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 31.1
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 31.0
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 30.9
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 30.7
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 30.7
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 30.6
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 30.6
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 30.5
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 30.5
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 30.5
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 30.4
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 30.3
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 30.1
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 30.1
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 30.0
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 29.8
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 29.8
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 29.8
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 29.5
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 29.4
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 29.4
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 29.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 29.3
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 29.3
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 29.1
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 29.1
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 29.0
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 29.0
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 29.0
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 28.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 28.6
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 28.5
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 28.1
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 28.1
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 28.0
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 27.5
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 27.3
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 27.2
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 27.0
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 26.9
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 26.8
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 26.7
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 26.6
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 26.5
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 26.4
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 26.3
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 26.0
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 25.9
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 25.6
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 25.4
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 25.3
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 25.3
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 24.9
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 24.9
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 24.7
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 24.5
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 24.2
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 24.2
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 24.1
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 24.0
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 23.9
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 23.8
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 23.8
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 23.3
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 23.2
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 23.1
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 22.9
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 22.9
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 22.4
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 22.3
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 22.2
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 22.1
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 21.7
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 21.6
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 21.4
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 21.2
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 21.2
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 21.0
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 20.9
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 20.8
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 20.6
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 20.6
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 19.8
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 19.8
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 19.6
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 19.4
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 19.3
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 19.2
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 19.2
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 19.0
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 19.0
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 18.8
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 18.8
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 18.5
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 18.1
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 18.0
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 17.8
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 17.4
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 17.3
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 17.3
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 16.9
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 16.8
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 16.5
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 16.5
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 16.4
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 16.3
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 16.3
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 16.3
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 15.9
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 15.5
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 15.3
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 15.2
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 15.1
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 14.8
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 14.8
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 14.5
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 14.4
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 13.6
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 13.0
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 12.4
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 9.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 8.5
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 61.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 61.1
FF:10176-103C5 60 years, female 61.1

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 5.4
Pig sample Sample description nTPM
Putamen
nTPM: 5.4
Samples: 4

Max nTPM: 6.5
Min nTPM: 4.8
Sample A Female 4.8
Sample B Female 5.1
Sample C Male 6.5
Sample D Male 5.0

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