MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:15.2 nTPM
HPA:15.2 nTPM
GTEx:30.6 nTPM
FANTOM5:2.3 Scaled Tags Per Million
Pig:92.2 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 15.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.8
2666 Male, age 74, left hemisphere 17.2
1827 Male, age 72, unknown 16.9
2219 Male, age 76, both hemispheres 13.3
2828 Female, age 72, unknown 9.9
1870 Female, age 42, unknown 6.0
2019 Male, age 18, unknown 5.6
2586 Male, age 75, left hemisphere 5.3
1833 Male, age 53, unknown 5.2
2411 Female, age 72, unknown 4.5
1830 Male, age 51, unknown 3.8
Dorsal raphe nucleus
nTPM: 8.8
2298 Female, age 72, unknown 17.4
2750 Male, age 76, both hemispheres 15.4
2047 Male, age 72, unknown 5.3
2016 Female, age 72, unknown 3.1
1828 Male, age 53, unknown 2.8
Inferior colliculus
nTPM: 7.6
2097 Female, age 72, unknown 10.0
2849 Male, age 72, unknown 7.1
1890 Male, age 53, unknown 6.9
1848 Female, age 42, unknown 6.4
Median raphe nucleus
nTPM: 11.5
2220 Male, age 76, midline 11.5
Pedunculopontine tegmental nucleus
nTPM: 12.9
2334 Male, age 80, both hemispheres 27.1
1921 Female, age 85, both hemispheres 7.6
2338 Male, age 61, both hemispheres 4.1
Periaquaductal grey, anterior
nTPM: 11.5
1795 Male, age 51, unknown 15.9
1947 Male, age 18, unknown 11.3
2502 Female, age 75, unknown 7.4
Periaquaductal grey, dorsal
nTPM: 9.3
1840 Male, age 53, unknown 12.2
1831 Male, age 72, unknown 11.4
2850 Male, age 76, both hemispheres 8.0
2464 Female, age 72, unknown 5.8
Periaquaductal grey, lateral
nTPM: 7.8
2053 Male, age 18, unknown 9.9
2272 Male, age 74, both hemispheres 6.9
2140 Male, age 76, both hemispheres 6.5
Pretectal area
nTPM: 13.6
1816 Male, age 51, unknown 24.5
1944 Female, age 72, unknown 23.3
1815 Male, age 53, unknown 22.0
2007 Male, age 72, unknown 16.3
2224 Female, age 72, unknown 12.6
1817 Female, age 42, unknown 12.5
2667 Female, age 75, unknown 12.3
2407 Male, age 75, both hemispheres 7.2
2825 Male, age 18, unknown 7.1
2273 Male, age 74, both hemispheres 6.8
2316 Male, age 76, right hemisphere 4.5
Red nucleus
nTPM: 2.6
2584 Male, age 75, left hemisphere 7.4
2725 Female, age 75, unknown 6.3
2785 Male, age 18, unknown 5.1
2588 Male, age 74, left hemisphere 3.8
2503 Female, age 72, unknown 3.4
1904 Male, age 53, unknown 2.1
2823 Male, age 76, right hemisphere 1.8
1821 Female, age 72, unknown 1.3
1954 Female, age 42, unknown 0.2
1865 Male, age 51, unknown 0.0
2227 Male, age 72, unknown 0.0
2769 Male, age 72, unknown 0.0
Substantia nigra
nTPM: 15.2
1916 Female, age 42, unknown 30.7
2241 Male, age 72, unknown 25.2
1851 Male, age 51, unknown 21.0
2409 Female, age 72, unknown 17.0
1889 Female, age 72, unknown 15.5
2699 Male, age 18, unknown 9.9
1941 Male, age 53, unknown 9.4
2665 Male, age 74, both hemispheres 8.0
2590 Female, age 75, unknown 7.6
2583 Male, age 75, right hemisphere 7.4
Superior colliculus
nTPM: 10.1
1796 Male, age 53, unknown 18.5
2087 Female, age 72, unknown 17.4
2261 Male, age 18, unknown 13.8
2668 Female, age 75, unknown 12.4
2664 Male, age 75, both hemispheres 7.6
1839 Male, age 51, unknown 7.1
1913 Female, age 42, unknown 6.7
1895 Male, age 76, right hemisphere 6.6
1995 Male, age 72, unknown 6.0
2587 Male, age 74, left hemisphere 4.7
Ventral tegmental area
nTPM: 13.8
2218 Male, age 76, both hemispheres 20.9
1915 Female, age 42, unknown 16.1
2410 Female, age 72, unknown 14.4
1942 Male, age 51, unknown 11.6
2021 Male, age 53, unknown 11.4
2223 Female, age 72, unknown 8.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.6
Samples: 139

Max nTPM: 162.7
Min nTPM: 0.2
Std nTPM: 31.5
Median nTPM: 17.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 162.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 137.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 112.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 111.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 102.6
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 93.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 91.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 86.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 86.5
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 86.3
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 85.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.3
FF:10158-103A5 76 years, female 2.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 92.2
Pig sample Sample description nTPM
Midbrain
nTPM: 51.2
Samples: 4

Max nTPM: 68.4
Min nTPM: 29.6
Sample A Female 29.6
Sample B Female 64.8
Sample C Male 68.4
Sample D Male 42.0
Periaqueductal gray
nTPM: 35.9
Samples: 3

Max nTPM: 43.9
Min nTPM: 31.6
Sample B Female 31.6
Sample C Male 43.9
Sample D Male 32.3
Substantia nigra
nTPM: 92.2
Samples: 4

Max nTPM: 152.5
Min nTPM: 23.1
Sample A Female 125.6
Sample B Female 67.5
Sample C Male 152.5
Sample D Male 23.1
Superior colliculi
nTPM: 38.2
Samples: 4

Max nTPM: 48.4
Min nTPM: 20.1
Sample A Female 38.2
Sample B Female 20.1
Sample C Male 48.4
Sample D Male 46.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.