MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:13.7 nTPM
HPA:13.7 nTPM
GTEx:132.4 nTPM
FANTOM5:0.0 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 13.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.2
1827 Male, age 72, unknown 12.6
1870 Female, age 42, unknown 12.6
2828 Female, age 72, unknown 12.6
2411 Female, age 72, unknown 12.4
1833 Male, age 53, unknown 12.2
1830 Male, age 51, unknown 12.1
2019 Male, age 18, unknown 12.1
2586 Male, age 75, left hemisphere 12.0
2219 Male, age 76, both hemispheres 11.8
2666 Male, age 74, left hemisphere 11.5
Dorsal raphe nucleus
nTPM: 12.8
2047 Male, age 72, unknown 13.5
1828 Male, age 53, unknown 13.3
2016 Female, age 72, unknown 12.4
2298 Female, age 72, unknown 12.4
2750 Male, age 76, both hemispheres 12.2
Inferior colliculus
nTPM: 13.2
1890 Male, age 53, unknown 13.9
2849 Male, age 72, unknown 13.6
1848 Female, age 42, unknown 12.8
2097 Female, age 72, unknown 12.4
Median raphe nucleus
nTPM: 13.0
2220 Male, age 76, midline 13.0
Pedunculopontine tegmental nucleus
nTPM: 13.5
2338 Male, age 61, both hemispheres 14.6
2334 Male, age 80, both hemispheres 13.6
1921 Female, age 85, both hemispheres 12.2
Periaquaductal grey, anterior
nTPM: 12.7
1947 Male, age 18, unknown 13.2
2502 Female, age 75, unknown 12.6
1795 Male, age 51, unknown 12.3
Periaquaductal grey, dorsal
nTPM: 13.5
1840 Male, age 53, unknown 15.3
2850 Male, age 76, both hemispheres 14.0
2464 Female, age 72, unknown 13.0
1831 Male, age 72, unknown 11.8
Periaquaductal grey, lateral
nTPM: 13.7
2272 Male, age 74, both hemispheres 14.1
2140 Male, age 76, both hemispheres 13.8
2053 Male, age 18, unknown 13.2
Pretectal area
nTPM: 12.7
2273 Male, age 74, both hemispheres 14.2
2825 Male, age 18, unknown 13.1
2316 Male, age 76, right hemisphere 13.0
2667 Female, age 75, unknown 12.8
1817 Female, age 42, unknown 12.6
1944 Female, age 72, unknown 12.6
2407 Male, age 75, both hemispheres 12.5
2224 Female, age 72, unknown 12.4
1815 Male, age 53, unknown 12.2
2007 Male, age 72, unknown 12.1
1816 Male, age 51, unknown 11.7
Red nucleus
nTPM: 12.3
2769 Male, age 72, unknown 12.8
1821 Female, age 72, unknown 12.7
1954 Female, age 42, unknown 12.5
2725 Female, age 75, unknown 12.5
1865 Male, age 51, unknown 12.4
2227 Male, age 72, unknown 12.4
2503 Female, age 72, unknown 12.4
2588 Male, age 74, left hemisphere 12.2
1904 Male, age 53, unknown 12.0
2584 Male, age 75, left hemisphere 12.0
2785 Male, age 18, unknown 12.0
2823 Male, age 76, right hemisphere 11.8
Substantia nigra
nTPM: 13.1
2241 Male, age 72, unknown 14.1
1851 Male, age 51, unknown 13.9
2699 Male, age 18, unknown 13.7
2665 Male, age 74, both hemispheres 13.6
2409 Female, age 72, unknown 13.4
2590 Female, age 75, unknown 12.9
1916 Female, age 42, unknown 12.5
2583 Male, age 75, right hemisphere 12.5
1941 Male, age 53, unknown 12.3
1889 Female, age 72, unknown 12.2
Superior colliculus
nTPM: 12.8
2587 Male, age 74, left hemisphere 14.1
1796 Male, age 53, unknown 13.1
2664 Male, age 75, both hemispheres 13.1
1895 Male, age 76, right hemisphere 13.0
1839 Male, age 51, unknown 12.8
1913 Female, age 42, unknown 12.8
2668 Female, age 75, unknown 12.7
2087 Female, age 72, unknown 12.3
2261 Male, age 18, unknown 12.1
1995 Male, age 72, unknown 12.0
Ventral tegmental area
nTPM: 12.2
1942 Male, age 51, unknown 12.7
1915 Female, age 42, unknown 12.5
2223 Female, age 72, unknown 12.4
2410 Female, age 72, unknown 12.4
2218 Male, age 76, both hemispheres 12.2
2021 Male, age 53, unknown 10.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 132.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 132.4
Samples: 139

Max nTPM: 363.7
Min nTPM: 0.0
Std nTPM: 89.9
Median nTPM: 151.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 363.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 344.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 318.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 278.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 262.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 261.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 259.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 249.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 248.2
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 242.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 233.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.0
FF:10158-103A5 76 years, female 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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