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RPS4Y1
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:188.4 nTPM
HPA:188.4 nTPM
GTEx:161.8 nTPM
FANTOM5:39.9 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA000857
Glandular cells High


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 188.4
overview
Male, age 65
Small intestine sample 232
nTPM: 253.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 183.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 164.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 152.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 161.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 161.8
Samples: 187

Max nTPM: 462.2
Min nTPM: 0.0
Std nTPM: 131.6
Median nTPM: 197.8
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 462.2
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 431.1
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 426.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 420.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 370.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 369.4
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 367.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 361.8
GTEX-1192X-2526-SM-59868 50-59 years, male 353.2
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 351.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 337.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 337.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 335.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 331.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 330.3
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 327.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 326.6
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 325.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 320.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 316.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 315.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 312.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 312.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 308.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 304.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 304.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 304.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 303.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 303.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 301.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 295.9
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 295.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 294.3
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 291.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 289.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 288.8
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 284.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 282.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 281.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 278.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 278.0
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 269.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 267.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 267.2
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 265.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 264.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 264.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 264.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 261.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 261.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 260.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 258.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 258.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 256.9
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 254.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 251.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 251.2
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 249.9
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 248.9
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 247.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 246.4
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 240.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 240.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 239.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 234.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 234.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 232.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 227.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 226.1
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 226.1
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 225.4
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 223.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 221.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 220.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 220.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 218.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 215.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 215.4
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 212.2
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 210.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 208.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 207.9
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 207.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 206.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 206.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 205.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 204.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 202.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 202.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 202.0
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 199.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 199.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 198.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 197.8
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 195.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 188.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 188.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 187.8
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 187.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 187.0
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 185.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 182.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 181.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 180.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 179.4
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 177.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 175.6
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 170.2
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 169.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 166.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 166.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 165.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 158.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 157.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 157.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 156.3
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 153.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 150.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 148.6
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 141.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 21.3
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 9.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 1.5
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 0.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 0.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 0.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 0.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 0.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 0.6
GTEX-1C475-1426-SM-793CH 40-49 years, female 0.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 0.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 0.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 0.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 0.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 0.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 0.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 0.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 0.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 0.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 0.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 0.4
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 0.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 0.4
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 0.4
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 0.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 0.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 0.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 0.4
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 0.4
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 0.3
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 0.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 0.3
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 0.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 0.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 0.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 0.3
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 0.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 0.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 0.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 0.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 0.2
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 0.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 0.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 0.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 0.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 0.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 0.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 0.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 0.1
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 0.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 0.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 0.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 0.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 0.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 0.1
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 0.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 0.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 0.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 0.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 0.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 0.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 0.0
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 0.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 0.0
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 0.0
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 39.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 39.9
FF:10024-101D6 15,40,85 years, mixed 39.9

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