BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:19.1 nTPM
HPA:19.1 nTPM
GTEx:13.4 nTPM
FANTOM5:72.5 Scaled Tags Per Million
Pig:15.2 nTPM
Mouse:18.4 nTPM
Allen mouse:2.6 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 19.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 13.8
2289 Male, age 61, right hemisphere 15.4
2288 Male, age 75, left hemisphere 14.6
2481 Female, age 94, left hemisphere 14.4
1781 Male, age 74, unknown 14.3
1854 Male, age 80, left hemisphere 14.0
2290 Female, age 72, unknown 12.9
2846 Female, age 79, unknown 12.8
1857 Female, age 85, left hemisphere 12.1
Claustrum
nTPM: 16.1
2292 Female, age 85, both hemispheres 19.5
2568 Male, age 61, both hemispheres 16.6
2491 Male, age 75, both hemispheres 16.1
1956 Male, age 74, unknown 15.9
2198 Male, age 80, both hemispheres 15.6
2284 Female, age 91, both hemispheres 15.3
2392 Female, age 94, both hemispheres 15.3
2645 Female, age 72, unknown 15.3
2196 Female, age 79, unknown 15.0
Globus pallidus, externus
nTPM: 18.6
2567 Female, age 72, unknown 23.0
2646 Male, age 61, right hemisphere 20.5
2772 Female, age 79, unknown 17.2
1996 Male, age 80, right hemisphere 16.3
2395 Male, age 75, both hemispheres 16.2
Globus pallidus, internus
nTPM: 19.1
2111 Female, age 85, right hemisphere 22.8
2778 Female, age 91, both hemispheres 22.4
2566 Female, age 72, unknown 20.9
2037 Male, age 80, right hemisphere 17.6
1818 Male, age 74, unknown 17.0
2287 Male, age 75, right hemisphere 16.8
2483 Female, age 94, right hemisphere 15.9
Nucleus accumbens
nTPM: 15.0
2391 Female, age 94, left hemisphere 18.5
2732 Male, age 80, right hemisphere 16.7
2824 Male, age 61, right hemisphere 16.3
2286 Male, age 75, left hemisphere 15.3
1783 Male, age 74, unknown 13.7
1856 Female, age 91, right hemisphere 13.4
2698 Female, age 72, unknown 13.4
1806 Female, age 85, left hemisphere 13.1
Nucleus basalis of Meynert
nTPM: 15.7
2569 Male, age 61, both hemispheres 18.7
2821 Male, age 75, both hemispheres 15.0
2393 Male, age 80, right hemisphere 14.7
2484 Female, age 94, left hemisphere 14.6
Nucleus of the diagonal band
nTPM: 13.6
2029 Male, age 61, right hemisphere 14.8
1979 Male, age 74, unknown 14.7
1812 Female, age 91, both hemispheres 13.0
2195 Female, age 85, both hemispheres 13.0
2775 Male, age 80, right hemisphere 12.7
Olfactory tubercle
nTPM: 13.7
2487 Female, age 94, left hemisphere 14.4
1998 Female, age 91, both hemispheres 13.9
1846 Male, age 80, right hemisphere 13.3
2856 Male, age 75, right hemisphere 13.1
Putamen
nTPM: 14.4
2647 Male, age 75, left hemisphere 16.2
2489 Female, age 72, unknown 16.0
2482 Female, age 94, left hemisphere 14.7
1829 Male, age 74, unknown 14.6
2466 Female, age 79, unknown 14.1
1838 Male, age 80, right hemisphere 13.3
1937 Female, age 91, right hemisphere 12.0
Septal nuclei
nTPM: 14.2
2394 Male, age 61, left hemisphere 15.8
2059 Female, age 85, both hemispheres 15.7
2199 Male, age 80, right hemisphere 15.4
2031 Female, age 72, unknown 13.4
2009 Female, age 91, both hemispheres 13.3
2629 Female, age 94, right hemisphere 12.9
1960 Male, age 74, unknown 12.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 13.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 12.6
Samples: 246

Max nTPM: 18.2
Min nTPM: 5.0
Std nTPM: 2.3
Median nTPM: 12.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 18.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 18.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 17.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 17.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 17.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 17.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 17.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 16.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 16.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 16.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 16.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 12.6
Samples: 246

Max nTPM: 21.2
Min nTPM: 4.5
Std nTPM: 2.1
Median nTPM: 12.4
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 21.2
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 18.0
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 18.0
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 17.9
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 17.8
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 17.5
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 17.2
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 17.2
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 17.0
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 16.9
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 16.9
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Brain - Putamen (basal ganglia)
Average nTPM: 13.4
Samples: 205

Max nTPM: 25.7
Min nTPM: 6.4
Std nTPM: 2.6
Median nTPM: 13.2
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 25.7
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 18.8
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 18.6
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 18.5
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 18.5
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 18.2
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 18.2
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 17.9
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 17.8
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 17.8
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 17.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 72.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 46.8
FF:10164-103B2 76 years, female 46.8
Globus pallidus
Scaled Tags Per Million: 72.5
FF:10175-103C4 60 years, female 73.4
FF:10161-103A8 76 years, female 71.7
Nucleus accumbens
Scaled Tags Per Million: 40.3
FF:10037-101F1 23-56 years, mixed 40.3
Putamen
Scaled Tags Per Million: 48.1
FF:10176-103C5 60 years, female 48.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 15.2
Pig sample Sample description nTPM
Caudate
nTPM: 13.8
Samples: 4

Max nTPM: 14.1
Min nTPM: 13.6
Sample A Female 13.6
Sample B Female 14.0
Sample C Male 14.1
Sample D Male 13.6
Putamen
nTPM: 14.2
Samples: 4

Max nTPM: 16.2
Min nTPM: 12.2
Sample A Female 16.2
Sample B Female 12.8
Sample C Male 12.2
Sample D Male 15.5
Septum
nTPM: 14.2
Samples: 4

Max nTPM: 14.8
Min nTPM: 13.4
Sample A Female 14.8
Sample B Female 14.8
Sample C Male 13.7
Sample D Male 13.4
Ventral pallidum
nTPM: 15.2
Samples: 4

Max nTPM: 17.2
Min nTPM: 13.5
Sample A Female 13.5
Sample B Female 14.4
Sample C Male 15.8
Sample D Male 17.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 18.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 18.4
Samples: 4

Max nTPM: 20.5
Min nTPM: 16.9
Sample A Male 18.4
Sample B Male 16.9
Sample C Female 20.5
Sample D Female 17.7
Septum
nTPM: 14.5
Samples: 4

Max nTPM: 16.8
Min nTPM: 12.2
Sample A Male 15.7
Sample B Male 13.1
Sample C Female 12.2
Sample D Female 16.8
Ventral forebrain
nTPM: 16.8
Samples: 4

Max nTPM: 18.3
Min nTPM: 15.3
Sample A Male 18.3
Sample B Male 15.8
Sample C Female 15.3
Sample D Female 17.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.6
69169875 Antisense, RP_050321_04_D04, Mouse strain C57BL/6J (56 days, male) 5.1
71158472 Antisense, RP_050810_01_G07, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 2.2
69169875 Antisense, RP_050321_04_D04, Mouse strain C57BL/6J (56 days, male) 4.4
71158472 Antisense, RP_050810_01_G07, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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