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ABHD17A
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:61.3 nTPM
HPA:61.3 nTPM
GTEx:159.7 nTPM
FANTOM5:20.2 Scaled Tags Per Million
Pig:39.8 nTPM
Mouse:134.3 nTPM
Allen mouse:0.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 61.3
Sample id Sample description nTPM
Amygdala
nTPM: 48.1
2814 Male, age 76, right hemisphere 64.2
2695 Female, age 67, right hemisphere 48.7
2517 Female, age 94, left hemisphere 47.8
2514 Male, age 75, right hemisphere 40.5
1987 Female, age 91, left hemisphere 39.1
Basal amygdala
nTPM: 52.2
2827 Female, age 67, right hemisphere 71.5
2685 Female, age 94, left hemisphere 55.0
2609 Male, age 75, right hemisphere 49.3
2110 Male, age 80, left hemisphere 47.1
2243 Female, age 91, right hemisphere 47.0
1955 Male, age 76, both hemispheres 43.4
Central amygdala
nTPM: 55.2
2826 Female, age 94, left hemisphere 84.3
1905 Male, age 76, both hemispheres 55.3
2515 Male, age 75, right hemisphere 51.5
2239 Male, age 80, left hemisphere 49.8
2701 Female, age 91, right hemisphere 35.0
Corticomedial amygdala
nTPM: 44.4
2535 Female, age 67, right hemisphere 60.1
2829 Male, age 80, left hemisphere 49.5
2428 Male, age 75, right hemisphere 46.1
2242 Female, age 91, right hemisphere 42.7
2429 Female, age 94, left hemisphere 41.1
2240 Male, age 76, both hemispheres 27.2
Lateral amygdala
nTPM: 61.3
2830 Female, age 67, right hemisphere 77.2
2534 Female, age 94, left hemisphere 70.3
2256 Male, age 80, left hemisphere 63.1
2255 Female, age 91, right hemisphere 53.7
1883 Male, age 76, both hemispheres 53.2
2516 Male, age 75, right hemisphere 50.1
Stria terminalis, bed nucleus
nTPM: 33.0
1974 Female, age 91, both hemispheres 36.6
2486 Female, age 94, both hemispheres 34.7
2201 Male, age 74, unknown 27.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 159.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 159.7
Samples: 152

Max nTPM: 326.3
Min nTPM: 47.7
Std nTPM: 57.0
Median nTPM: 152.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 326.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 311.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 286.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 284.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 282.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 275.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 268.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 263.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 262.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 251.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 249.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 247.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 245.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 239.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 235.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 232.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 232.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 230.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 230.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 229.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 227.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 224.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 222.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 219.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 214.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 214.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 212.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 212.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 209.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 206.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 205.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 203.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 201.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 200.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 200.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 199.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 199.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 198.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 195.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 195.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 194.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 193.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 191.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 188.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 187.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 185.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 185.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 184.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 183.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 181.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 180.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 180.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 179.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 177.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 177.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 177.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 177.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 176.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 175.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 173.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 173.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 171.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 171.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 170.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 169.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 166.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 166.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 165.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 165.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 165.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 165.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 163.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 162.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 162.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 160.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 153.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 152.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 152.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 151.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 151.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 150.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 149.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 143.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 143.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 142.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 141.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 140.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 140.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 139.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 138.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 136.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 136.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 135.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 135.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 134.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 134.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 134.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 130.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 130.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 130.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 129.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 129.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 128.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 128.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 127.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 127.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 127.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 126.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 126.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 125.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 125.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 124.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 122.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 120.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 120.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 117.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 116.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 116.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 115.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 115.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 114.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 111.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 111.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 110.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 108.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 106.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 106.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 104.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 103.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 101.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 101.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 100.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 100.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 99.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 96.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 94.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 93.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 90.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 87.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 82.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 81.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 77.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 71.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 71.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 64.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 61.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 59.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 56.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 56.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 53.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 52.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 47.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 20.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 20.2
FF:10151-102I7 76 years, female 20.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 39.8
Pig sample Sample description nTPM
Amygdala
nTPM: 39.8
Samples: 4

Max nTPM: 45.5
Min nTPM: 32.5
Sample A Female 45.5
Sample B Female 37.3
Sample C Male 43.9
Sample D Male 32.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 134.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 134.4
Samples: 4

Max nTPM: 176.9
Min nTPM: 112.6
Sample A Male 112.6
Sample B Male 122.7
Sample C Female 176.9
Sample D Female 125.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
69549674 Antisense, RP_050317_04_E11, Mouse strain C57BL/6J (56 days, male) 0.0

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