MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:56.2 nTPM
HPA:56.2 nTPM
GTEx:55.1 nTPM
FANTOM5:43.8 Scaled Tags Per Million
Pig:16.8 nTPM
Mouse:17.9 nTPM
Allen mouse:11.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.3
1870 Female, age 42, unknown 54.5
2666 Male, age 74, left hemisphere 54.4
1830 Male, age 51, unknown 53.5
1833 Male, age 53, unknown 52.9
2586 Male, age 75, left hemisphere 52.7
2411 Female, age 72, unknown 52.3
2828 Female, age 72, unknown 51.4
2019 Male, age 18, unknown 47.7
1827 Male, age 72, unknown 47.6
2219 Male, age 76, both hemispheres 46.0
Dorsal raphe nucleus
nTPM: 52.4
2016 Female, age 72, unknown 57.1
2750 Male, age 76, both hemispheres 53.6
1828 Male, age 53, unknown 52.0
2047 Male, age 72, unknown 51.6
2298 Female, age 72, unknown 48.0
Inferior colliculus
nTPM: 50.5
1890 Male, age 53, unknown 53.0
2097 Female, age 72, unknown 50.3
1848 Female, age 42, unknown 49.6
2849 Male, age 72, unknown 49.0
Median raphe nucleus
nTPM: 55.7
2220 Male, age 76, midline 55.7
Pedunculopontine tegmental nucleus
nTPM: 48.2
2334 Male, age 80, both hemispheres 51.5
1921 Female, age 85, both hemispheres 48.8
2338 Male, age 61, both hemispheres 44.3
Periaquaductal grey, anterior
nTPM: 49.7
2502 Female, age 75, unknown 51.9
1947 Male, age 18, unknown 51.6
1795 Male, age 51, unknown 45.7
Periaquaductal grey, dorsal
nTPM: 52.0
1840 Male, age 53, unknown 52.9
2850 Male, age 76, both hemispheres 52.6
2464 Female, age 72, unknown 52.2
1831 Male, age 72, unknown 50.4
Periaquaductal grey, lateral
nTPM: 47.4
2053 Male, age 18, unknown 51.3
2140 Male, age 76, both hemispheres 49.2
2272 Male, age 74, both hemispheres 41.6
Pretectal area
nTPM: 46.9
1815 Male, age 53, unknown 50.2
2224 Female, age 72, unknown 49.2
1817 Female, age 42, unknown 48.7
2825 Male, age 18, unknown 48.7
2316 Male, age 76, right hemisphere 48.6
2407 Male, age 75, both hemispheres 46.6
2667 Female, age 75, unknown 45.8
2007 Male, age 72, unknown 45.4
1816 Male, age 51, unknown 45.2
1944 Female, age 72, unknown 44.0
2273 Male, age 74, both hemispheres 43.4
Red nucleus
nTPM: 56.2
2588 Male, age 74, left hemisphere 63.2
2503 Female, age 72, unknown 60.6
1821 Female, age 72, unknown 59.4
1904 Male, age 53, unknown 58.8
1954 Female, age 42, unknown 56.9
2227 Male, age 72, unknown 56.8
1865 Male, age 51, unknown 56.1
2769 Male, age 72, unknown 56.1
2725 Female, age 75, unknown 53.6
2823 Male, age 76, right hemisphere 53.4
2584 Male, age 75, left hemisphere 51.4
2785 Male, age 18, unknown 48.5
Substantia nigra
nTPM: 53.5
2241 Male, age 72, unknown 59.4
2699 Male, age 18, unknown 59.4
2665 Male, age 74, both hemispheres 56.3
1851 Male, age 51, unknown 55.0
1916 Female, age 42, unknown 53.0
2409 Female, age 72, unknown 53.0
1889 Female, age 72, unknown 51.1
2583 Male, age 75, right hemisphere 50.8
2590 Female, age 75, unknown 50.3
1941 Male, age 53, unknown 46.2
Superior colliculus
nTPM: 48.9
2668 Female, age 75, unknown 52.7
1995 Male, age 72, unknown 51.9
1913 Female, age 42, unknown 51.4
2587 Male, age 74, left hemisphere 51.4
1839 Male, age 51, unknown 49.6
1895 Male, age 76, right hemisphere 47.4
2664 Male, age 75, both hemispheres 47.0
1796 Male, age 53, unknown 46.3
2261 Male, age 18, unknown 46.1
2087 Female, age 72, unknown 45.7
Ventral tegmental area
nTPM: 53.5
2223 Female, age 72, unknown 57.5
1942 Male, age 51, unknown 55.0
1915 Female, age 42, unknown 52.9
2021 Male, age 53, unknown 52.8
2410 Female, age 72, unknown 51.9
2218 Male, age 76, both hemispheres 50.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 55.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 55.1
Samples: 139

Max nTPM: 103.2
Min nTPM: 11.3
Std nTPM: 18.1
Median nTPM: 53.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 103.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 102.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 100.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 97.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 95.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 94.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 94.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 90.0
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 87.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 85.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 85.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.8
FF:10158-103A5 76 years, female 43.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.8
Pig sample Sample description nTPM
Midbrain
nTPM: 16.3
Samples: 4

Max nTPM: 23.1
Min nTPM: 12.0
Sample A Female 23.1
Sample B Female 16.5
Sample C Male 12.0
Sample D Male 13.7
Periaqueductal gray
nTPM: 15.5
Samples: 3

Max nTPM: 16.5
Min nTPM: 14.5
Sample B Female 16.5
Sample C Male 15.6
Sample D Male 14.5
Substantia nigra
nTPM: 16.9
Samples: 4

Max nTPM: 18.3
Min nTPM: 14.5
Sample A Female 18.3
Sample B Female 14.5
Sample C Male 17.7
Sample D Male 16.9
Superior colliculi
nTPM: 14.1
Samples: 4

Max nTPM: 15.8
Min nTPM: 12.4
Sample A Female 15.8
Sample B Female 12.4
Sample C Male 14.2
Sample D Male 14.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.9
Samples: 4

Max nTPM: 19.4
Min nTPM: 16.6
Sample A Male 17.1
Sample B Male 16.6
Sample C Female 18.4
Sample D Female 19.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.5
68269066 Antisense, RP_041208_01_H05, Mouse strain C57BL/6J (56 days, male) 11.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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