MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:178.6 nTPM
HPA:178.6 nTPM
GTEx:248.7 nTPM
FANTOM5:326.8 Scaled Tags Per Million
Pig:131.9 nTPM
Mouse:50.9 nTPM
Allen mouse:3.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 178.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 158.1
1870 Female, age 42, unknown 164.6
2828 Female, age 72, unknown 163.9
1833 Male, age 53, unknown 162.1
2019 Male, age 18, unknown 161.9
1830 Male, age 51, unknown 160.8
2666 Male, age 74, left hemisphere 160.4
1827 Male, age 72, unknown 157.7
2411 Female, age 72, unknown 157.6
2219 Male, age 76, both hemispheres 149.2
2586 Male, age 75, left hemisphere 142.6
Dorsal raphe nucleus
nTPM: 166.4
2016 Female, age 72, unknown 171.4
2298 Female, age 72, unknown 171.3
2047 Male, age 72, unknown 165.9
1828 Male, age 53, unknown 165.8
2750 Male, age 76, both hemispheres 157.5
Inferior colliculus
nTPM: 164.5
2097 Female, age 72, unknown 168.7
1890 Male, age 53, unknown 166.3
1848 Female, age 42, unknown 163.1
2849 Male, age 72, unknown 159.7
Median raphe nucleus
nTPM: 168.5
2220 Male, age 76, midline 168.5
Pedunculopontine tegmental nucleus
nTPM: 178.6
2338 Male, age 61, both hemispheres 211.7
2334 Male, age 80, both hemispheres 169.8
1921 Female, age 85, both hemispheres 154.3
Periaquaductal grey, anterior
nTPM: 159.2
1795 Male, age 51, unknown 162.0
1947 Male, age 18, unknown 159.4
2502 Female, age 75, unknown 156.2
Periaquaductal grey, dorsal
nTPM: 166.4
2850 Male, age 76, both hemispheres 177.1
1831 Male, age 72, unknown 171.3
2464 Female, age 72, unknown 160.1
1840 Male, age 53, unknown 157.0
Periaquaductal grey, lateral
nTPM: 171.7
2272 Male, age 74, both hemispheres 176.9
2140 Male, age 76, both hemispheres 170.8
2053 Male, age 18, unknown 167.3
Pretectal area
nTPM: 165.4
2224 Female, age 72, unknown 176.2
2407 Male, age 75, both hemispheres 174.5
1817 Female, age 42, unknown 168.7
2273 Male, age 74, both hemispheres 167.7
2667 Female, age 75, unknown 165.3
1944 Female, age 72, unknown 163.4
1815 Male, age 53, unknown 162.3
2007 Male, age 72, unknown 161.8
1816 Male, age 51, unknown 160.9
2316 Male, age 76, right hemisphere 160.1
2825 Male, age 18, unknown 158.2
Red nucleus
nTPM: 165.2
1954 Female, age 42, unknown 171.8
1821 Female, age 72, unknown 171.2
2769 Male, age 72, unknown 170.5
1865 Male, age 51, unknown 169.5
1904 Male, age 53, unknown 167.9
2227 Male, age 72, unknown 166.3
2785 Male, age 18, unknown 165.1
2725 Female, age 75, unknown 165.0
2503 Female, age 72, unknown 164.8
2823 Male, age 76, right hemisphere 158.4
2584 Male, age 75, left hemisphere 155.9
2588 Male, age 74, left hemisphere 155.6
Substantia nigra
nTPM: 170.8
2699 Male, age 18, unknown 183.7
2665 Male, age 74, both hemispheres 179.9
1916 Female, age 42, unknown 176.5
2590 Female, age 75, unknown 169.3
2583 Male, age 75, right hemisphere 169.2
1851 Male, age 51, unknown 168.6
2241 Male, age 72, unknown 165.9
1889 Female, age 72, unknown 165.4
1941 Male, age 53, unknown 164.9
2409 Female, age 72, unknown 164.8
Superior colliculus
nTPM: 163.1
1796 Male, age 53, unknown 169.1
2587 Male, age 74, left hemisphere 167.6
2668 Female, age 75, unknown 166.8
2087 Female, age 72, unknown 166.6
2664 Male, age 75, both hemispheres 164.2
1913 Female, age 42, unknown 164.0
1995 Male, age 72, unknown 162.6
2261 Male, age 18, unknown 158.3
1839 Male, age 51, unknown 157.3
1895 Male, age 76, right hemisphere 154.5
Ventral tegmental area
nTPM: 167.9
1915 Female, age 42, unknown 177.7
2223 Female, age 72, unknown 168.6
2021 Male, age 53, unknown 168.5
1942 Male, age 51, unknown 167.8
2218 Male, age 76, both hemispheres 166.3
2410 Female, age 72, unknown 158.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 248.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 248.7
Samples: 139

Max nTPM: 686.0
Min nTPM: 95.0
Std nTPM: 105.7
Median nTPM: 237.4
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 686.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 622.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 616.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 598.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 490.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 473.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 437.5
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 426.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 415.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 411.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 398.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 326.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 326.8
FF:10158-103A5 76 years, female 326.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 131.9
Pig sample Sample description nTPM
Midbrain
nTPM: 102.0
Samples: 4

Max nTPM: 119.6
Min nTPM: 87.7
Sample A Female 119.6
Sample B Female 110.1
Sample C Male 87.7
Sample D Male 90.5
Periaqueductal gray
nTPM: 103.9
Samples: 3

Max nTPM: 113.1
Min nTPM: 98.3
Sample B Female 98.3
Sample C Male 113.1
Sample D Male 100.4
Substantia nigra
nTPM: 131.9
Samples: 4

Max nTPM: 166.7
Min nTPM: 111.2
Sample A Female 129.5
Sample B Female 166.7
Sample C Male 111.2
Sample D Male 120.0
Superior colliculi
nTPM: 118.2
Samples: 4

Max nTPM: 162.6
Min nTPM: 97.1
Sample A Female 109.9
Sample B Female 162.6
Sample C Male 97.1
Sample D Male 103.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 50.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 50.9
Samples: 4

Max nTPM: 52.4
Min nTPM: 49.8
Sample A Male 49.8
Sample B Male 50.7
Sample C Female 50.7
Sample D Female 52.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.1
69873409 Antisense, RP_050512_01_B12, Mouse strain C57BL/6J (56 days, male) 3.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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