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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:171.6 nTPM
HPA:171.6 nTPM
GTEx:266.1 nTPM
FANTOM5:326.2 Scaled Tags Per Million
Pig:108.9 nTPM
Mouse:37.7 nTPM
Allen mouse:2.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 171.6
Sample id Sample description nTPM
Amygdala
nTPM: 171.6
2514 Male, age 75, right hemisphere 194.4
2695 Female, age 67, right hemisphere 173.2
1987 Female, age 91, left hemisphere 166.6
2814 Male, age 76, right hemisphere 163.7
2517 Female, age 94, left hemisphere 159.9
Basal amygdala
nTPM: 163.5
1955 Male, age 76, both hemispheres 167.8
2827 Female, age 67, right hemisphere 165.3
2609 Male, age 75, right hemisphere 164.9
2110 Male, age 80, left hemisphere 163.9
2243 Female, age 91, right hemisphere 163.1
2685 Female, age 94, left hemisphere 156.0
Central amygdala
nTPM: 163.5
2826 Female, age 94, left hemisphere 174.1
2701 Female, age 91, right hemisphere 165.0
1905 Male, age 76, both hemispheres 161.4
2515 Male, age 75, right hemisphere 158.5
2239 Male, age 80, left hemisphere 158.4
Corticomedial amygdala
nTPM: 169.5
2428 Male, age 75, right hemisphere 180.1
2240 Male, age 76, both hemispheres 172.8
2242 Female, age 91, right hemisphere 170.5
2429 Female, age 94, left hemisphere 168.0
2535 Female, age 67, right hemisphere 164.4
2829 Male, age 80, left hemisphere 161.4
Lateral amygdala
nTPM: 164.4
2830 Female, age 67, right hemisphere 169.7
2534 Female, age 94, left hemisphere 166.0
1883 Male, age 76, both hemispheres 164.1
2255 Female, age 91, right hemisphere 163.7
2516 Male, age 75, right hemisphere 162.8
2256 Male, age 80, left hemisphere 160.2
Stria terminalis, bed nucleus
nTPM: 155.2
1974 Female, age 91, both hemispheres 158.7
2201 Male, age 74, unknown 154.5
2486 Female, age 94, both hemispheres 152.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 266.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 266.1
Samples: 152

Max nTPM: 1114.5
Min nTPM: 104.1
Std nTPM: 135.3
Median nTPM: 229.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1114.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 793.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 764.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 703.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 602.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 593.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 523.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 512.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 466.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 447.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 441.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 424.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 420.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 419.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 406.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 402.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 402.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 400.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 392.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 390.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 379.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 379.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 359.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 353.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 352.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 350.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 331.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 328.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 327.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 323.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 323.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 319.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 318.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 316.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 311.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 302.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 301.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 300.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 299.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 295.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 294.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 293.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 292.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 289.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 287.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 286.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 284.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 283.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 282.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 274.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 271.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 270.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 268.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 267.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 267.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 265.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 261.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 259.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 259.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 251.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 250.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 249.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 246.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 245.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 244.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 244.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 244.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 244.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 243.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 243.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 238.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 235.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 234.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 233.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 232.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 232.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 227.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 225.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 222.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 221.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 221.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 220.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 217.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 217.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 217.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 217.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 216.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 216.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 214.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 214.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 213.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 212.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 212.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 211.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 209.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 209.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 209.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 209.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 206.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 205.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 204.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 204.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 204.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 203.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 199.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 199.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 199.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 196.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 192.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 190.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 189.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 186.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 186.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 186.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 185.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 184.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 183.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 183.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 182.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 182.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 182.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 181.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 180.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 179.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 177.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 177.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 174.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 172.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 171.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 169.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 167.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 167.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 167.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 166.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 162.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 158.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 157.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 156.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 154.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 146.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 143.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 136.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 135.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 133.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 131.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 123.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 122.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 120.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 116.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 114.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 107.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 104.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 326.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 326.2
FF:10151-102I7 76 years, female 326.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 108.9
Pig sample Sample description nTPM
Amygdala
nTPM: 109.0
Samples: 4

Max nTPM: 117.6
Min nTPM: 86.8
Sample A Female 117.6
Sample B Female 116.9
Sample C Male 114.5
Sample D Male 86.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 37.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 37.7
Samples: 4

Max nTPM: 43.7
Min nTPM: 34.0
Sample A Male 34.0
Sample B Male 38.4
Sample C Female 43.7
Sample D Female 34.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.0
69873409 Antisense, RP_050512_01_B12, Mouse strain C57BL/6J (56 days, male) 2.0

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