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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Endocrine cells: Not detected
Enterocytes: Not detected
Enterocytes - Microvilli: Not detected
Goblet cells: Not detected
Paneth cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:431.3 nTPM
HPA:117.0 nTPM
GTEx:431.3 nTPM
FANTOM5:463.0 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA014263Antibody CAB000007
Endocrine cells Not detected-
Enterocytes Not detected-
Enterocytes - Microvilli Not detected-
Glandular cells -Not detected
Goblet cells Not detected-
Paneth cells Not detected-




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 117.0
overview
Male, age 65
Small intestine sample 232
nTPM: 24.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 152
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 146.4
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 145

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 431.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 431.3
Samples: 187

Max nTPM: 3544.4
Min nTPM: 9.8
Std nTPM: 788.8
Median nTPM: 64.1
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 3544.4
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 3361.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 3101.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 2886.4
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 2822.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 2812.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 2676.9
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 2669.3
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 2627.7
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 2386.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 2328.5
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 2326.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 2296.8
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 2277.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 2152.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 2069.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1957.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1896.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1868.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1862.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1726.6
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1712.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1281.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1237.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1164.2
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1075.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1064.4
GTEX-1192X-2526-SM-59868 50-59 years, male 1002.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 988.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 984.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 868.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 782.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 680.3
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 667.8
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 631.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 600.1
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 576.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 563.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 553.9
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 482.9
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 477.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 471.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 408.8
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 407.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 368.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 335.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 268.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 266.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 254.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 229.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 226.2
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 204.5
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 190.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 184.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 182.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 170.0
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 165.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 159.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 156.5
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 154.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 137.0
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 125.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 125.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 123.6
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 120.3
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 120.1
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 119.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 118.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 116.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 115.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 110.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 90.3
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 89.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 87.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 85.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 84.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 84.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 84.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 83.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 82.9
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 82.7
GTEX-13113-1226-SM-5EGHT 60-69 years, female 80.5
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 77.3
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 77.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 75.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 73.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 73.2
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 69.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 68.0
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 66.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 65.0
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 64.5
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 64.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 64.1
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 63.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 63.0
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 62.6
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 62.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 62.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 61.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 61.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 61.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 60.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 60.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 60.3
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 60.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 59.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 59.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 58.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 56.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 56.8
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 56.2
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 53.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 53.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 52.1
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 51.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 51.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 50.0
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 49.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 49.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 49.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 47.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 47.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 47.3
GTEX-ZTSS-0926-SM-59865 40-49 years, male 46.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 46.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 46.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 44.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 44.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 44.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 43.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 43.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 42.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 42.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 40.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 40.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 40.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 39.6
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 39.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 38.6
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 37.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 37.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 37.2
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 37.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 36.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 35.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 35.6
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 35.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 34.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 34.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 34.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 33.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 33.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 33.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 32.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 32.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 32.5
GTEX-144GM-1026-SM-79OKU 20-29 years, male 32.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 31.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 30.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 30.1
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 29.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 29.3
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 29.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 28.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 28.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 28.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 28.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 28.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 28.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 27.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 27.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 26.2
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 26.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 24.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 23.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 22.6
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 22.2
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 21.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 21.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 20.0
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 19.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 19.4
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 18.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 12.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 11.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 9.8
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 463.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 463.0
FF:10024-101D6 15,40,85 years, mixed 463.0

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