BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:52.2 nTPM
HPA:52.2 nTPM
GTEx:37.3 nTPM
FANTOM5:36.4 Scaled Tags Per Million
Pig:11.4 nTPM
Mouse:43.0 nTPM
Allen mouse:4.8 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA042826
Glial cells Low
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 52.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 51.5
2481 Female, age 94, left hemisphere 53.2
1857 Female, age 85, left hemisphere 52.1
2288 Male, age 75, left hemisphere 52.1
1854 Male, age 80, left hemisphere 51.7
2290 Female, age 72, unknown 51.4
2289 Male, age 61, right hemisphere 50.8
2846 Female, age 79, unknown 50.8
1781 Male, age 74, unknown 49.6
Claustrum
nTPM: 51.2
2198 Male, age 80, both hemispheres 52.5
2491 Male, age 75, both hemispheres 52.2
2392 Female, age 94, both hemispheres 51.4
1956 Male, age 74, unknown 51.3
2568 Male, age 61, both hemispheres 51.3
2292 Female, age 85, both hemispheres 51.2
2196 Female, age 79, unknown 50.8
2645 Female, age 72, unknown 50.2
2284 Female, age 91, both hemispheres 49.7
Globus pallidus, externus
nTPM: 52.0
2646 Male, age 61, right hemisphere 53.0
2395 Male, age 75, both hemispheres 52.8
2772 Female, age 79, unknown 52.3
1996 Male, age 80, right hemisphere 51.5
2567 Female, age 72, unknown 50.6
Globus pallidus, internus
nTPM: 52.2
2778 Female, age 91, both hemispheres 53.8
2111 Female, age 85, right hemisphere 53.5
2483 Female, age 94, right hemisphere 53.2
2287 Male, age 75, right hemisphere 52.5
1818 Male, age 74, unknown 51.1
2566 Female, age 72, unknown 51.0
2037 Male, age 80, right hemisphere 50.4
Nucleus accumbens
nTPM: 51.7
2391 Female, age 94, left hemisphere 52.4
2824 Male, age 61, right hemisphere 52.2
1806 Female, age 85, left hemisphere 52.0
1856 Female, age 91, right hemisphere 51.9
2286 Male, age 75, left hemisphere 51.7
2732 Male, age 80, right hemisphere 51.5
2698 Female, age 72, unknown 51.1
1783 Male, age 74, unknown 50.8
Nucleus basalis of Meynert
nTPM: 51.0
2569 Male, age 61, both hemispheres 52.1
2393 Male, age 80, right hemisphere 51.4
2484 Female, age 94, left hemisphere 50.5
2821 Male, age 75, both hemispheres 49.9
Nucleus of the diagonal band
nTPM: 51.6
2775 Male, age 80, right hemisphere 52.7
1979 Male, age 74, unknown 51.7
2195 Female, age 85, both hemispheres 51.7
1812 Female, age 91, both hemispheres 51.4
2029 Male, age 61, right hemisphere 50.7
Olfactory tubercle
nTPM: 51.8
1846 Male, age 80, right hemisphere 52.7
2856 Male, age 75, right hemisphere 51.8
2487 Female, age 94, left hemisphere 51.4
1998 Female, age 91, both hemispheres 51.2
Putamen
nTPM: 51.2
2482 Female, age 94, left hemisphere 52.6
1838 Male, age 80, right hemisphere 51.9
1937 Female, age 91, right hemisphere 51.8
2466 Female, age 79, unknown 51.1
1829 Male, age 74, unknown 50.5
2489 Female, age 72, unknown 50.3
2647 Male, age 75, left hemisphere 50.1
Septal nuclei
nTPM: 51.3
1960 Male, age 74, unknown 52.2
2199 Male, age 80, right hemisphere 51.8
2031 Female, age 72, unknown 51.5
2394 Male, age 61, left hemisphere 51.5
2059 Female, age 85, both hemispheres 50.9
2009 Female, age 91, both hemispheres 50.5
2629 Female, age 94, right hemisphere 50.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 37.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 35.7
Samples: 246

Max nTPM: 66.2
Min nTPM: 20.3
Std nTPM: 6.4
Median nTPM: 35.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 66.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 64.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 52.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 48.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 48.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 48.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 47.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 47.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 47.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 47.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 47.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 37.3
Samples: 246

Max nTPM: 73.7
Min nTPM: 19.3
Std nTPM: 8.6
Median nTPM: 35.0
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 73.7
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 62.0
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 61.5
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 60.7
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 60.0
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 59.4
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 59.2
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 56.4
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 55.2
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 54.7
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 54.4
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Brain - Putamen (basal ganglia)
Average nTPM: 36.6
Samples: 205

Max nTPM: 60.0
Min nTPM: 21.1
Std nTPM: 6.7
Median nTPM: 36.3
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 60.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 58.4
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 56.5
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 52.5
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 51.4
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 50.5
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 50.4
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 50.3
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 49.4
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 48.3
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 47.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 27.7
FF:10164-103B2 76 years, female 27.7
Globus pallidus
Scaled Tags Per Million: 36.4
FF:10161-103A8 76 years, female 42.0
FF:10175-103C4 60 years, female 30.7
Nucleus accumbens
Scaled Tags Per Million: 32.9
FF:10037-101F1 23-56 years, mixed 32.9
Putamen
Scaled Tags Per Million: 30.8
FF:10176-103C5 60 years, female 30.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 11.4
Pig sample Sample description nTPM
Caudate
nTPM: 9.7
Samples: 4

Max nTPM: 10.5
Min nTPM: 9.3
Sample A Female 9.4
Sample B Female 9.3
Sample C Male 10.5
Sample D Male 9.5
Putamen
nTPM: 11.4
Samples: 4

Max nTPM: 16.4
Min nTPM: 8.8
Sample A Female 8.8
Sample B Female 10.2
Sample C Male 16.4
Sample D Male 10.1
Septum
nTPM: 8.9
Samples: 4

Max nTPM: 9.8
Min nTPM: 7.6
Sample A Female 9.8
Sample B Female 9.4
Sample C Male 8.7
Sample D Male 7.6
Ventral pallidum
nTPM: 9.6
Samples: 4

Max nTPM: 10.8
Min nTPM: 8.2
Sample A Female 10.0
Sample B Female 10.8
Sample C Male 8.2
Sample D Male 9.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 43.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 39.8
Samples: 4

Max nTPM: 43.7
Min nTPM: 37.6
Sample A Male 39.7
Sample B Male 37.6
Sample C Female 43.7
Sample D Female 38.0
Septum
nTPM: 43.0
Samples: 4

Max nTPM: 45.5
Min nTPM: 42.0
Sample A Male 42.0
Sample B Male 42.0
Sample C Female 45.5
Sample D Female 42.5
Ventral forebrain
nTPM: 41.0
Samples: 4

Max nTPM: 43.1
Min nTPM: 39.1
Sample A Male 39.3
Sample B Male 39.1
Sample C Female 42.3
Sample D Female 43.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.8
69173980 Antisense, RP_050329_01_F12, Mouse strain C57BL/6J (56 days, male) 4.8
Pallidum
Expression energy: 4.2
69173980 Antisense, RP_050329_01_F12, Mouse strain C57BL/6J (56 days, male) 4.2

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The Human Protein Atlas

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