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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:90.3 nTPM
HPA:90.3 nTPM
GTEx:271.6 nTPM
FANTOM5:6.6 Scaled Tags Per Million
Mouse:8.7 nTPM
Allen mouse:3.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 90.3
Sample id Sample description nTPM
Amygdala
nTPM: 90.3
2695 Female, age 67, right hemisphere 118.0
2814 Male, age 76, right hemisphere 88.1
1987 Female, age 91, left hemisphere 87.1
2514 Male, age 75, right hemisphere 86.8
2517 Female, age 94, left hemisphere 71.4
Basal amygdala
nTPM: 76.1
1955 Male, age 76, both hemispheres 86.5
2243 Female, age 91, right hemisphere 85.4
2609 Male, age 75, right hemisphere 81.3
2110 Male, age 80, left hemisphere 74.7
2685 Female, age 94, left hemisphere 65.0
2827 Female, age 67, right hemisphere 64.0
Central amygdala
nTPM: 81.1
2701 Female, age 91, right hemisphere 106.4
1905 Male, age 76, both hemispheres 82.9
2239 Male, age 80, left hemisphere 75.1
2515 Male, age 75, right hemisphere 72.8
2826 Female, age 94, left hemisphere 68.5
Corticomedial amygdala
nTPM: 78.8
2242 Female, age 91, right hemisphere 91.5
2240 Male, age 76, both hemispheres 85.7
2428 Male, age 75, right hemisphere 80.5
2829 Male, age 80, left hemisphere 75.4
2429 Female, age 94, left hemisphere 73.2
2535 Female, age 67, right hemisphere 66.5
Lateral amygdala
nTPM: 77.2
2255 Female, age 91, right hemisphere 91.6
1883 Male, age 76, both hemispheres 88.0
2256 Male, age 80, left hemisphere 79.3
2516 Male, age 75, right hemisphere 72.6
2534 Female, age 94, left hemisphere 66.6
2830 Female, age 67, right hemisphere 65.3
Stria terminalis, bed nucleus
nTPM: 82.2
2201 Male, age 74, unknown 107.9
2486 Female, age 94, both hemispheres 73.6
1974 Female, age 91, both hemispheres 65.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 271.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 271.6
Samples: 152

Max nTPM: 1127.9
Min nTPM: 37.2
Std nTPM: 187.0
Median nTPM: 225.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1127.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 969.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 824.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 808.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 760.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 760.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 659.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 641.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 628.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 595.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 582.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 579.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 568.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 550.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 547.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 527.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 502.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 496.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 470.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 455.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 431.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 430.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 418.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 409.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 406.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 402.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 400.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 397.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 395.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 391.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 387.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 381.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 367.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 365.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 358.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 352.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 351.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 343.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 343.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 339.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 339.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 338.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 334.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 328.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 326.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 314.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 313.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 311.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 306.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 297.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 295.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 290.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 286.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 280.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 279.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 274.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 272.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 270.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 269.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 264.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 262.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 260.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 247.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 244.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 243.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 242.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 242.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 242.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 240.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 239.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 232.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 231.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 230.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 229.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 227.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 225.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 225.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 219.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 218.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 216.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 216.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 212.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 207.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 205.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 203.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 201.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 196.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 195.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 195.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 194.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 193.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 192.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 191.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 189.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 185.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 182.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 180.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 177.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 176.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 176.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 174.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 174.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 172.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 170.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 169.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 169.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 169.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 168.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 167.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 162.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 161.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 161.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 157.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 156.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 156.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 155.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 149.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 140.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 138.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 136.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 133.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 129.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 126.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 122.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 121.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 120.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 117.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 116.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 116.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 114.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 105.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 105.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 104.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 88.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 87.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 86.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 86.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 84.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 78.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 76.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 72.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 63.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 59.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 59.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 54.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 50.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 47.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 46.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 45.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 44.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 43.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 37.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 6.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 6.6
FF:10151-102I7 76 years, female 6.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 8.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 8.8
Samples: 4

Max nTPM: 11.6
Min nTPM: 5.8
Sample A Male 9.4
Sample B Male 8.2
Sample C Female 5.8
Sample D Female 11.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 3.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.7
68910959 Antisense, RP_041214_01_G03, Mouse strain C57BL/6J (56 days, male) 3.7

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