MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:152.8 nTPM
HPA:152.8 nTPM
GTEx:747.6 nTPM
FANTOM5:30.7 Scaled Tags Per Million
Mouse:20.7 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 152.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 89.1
2666 Male, age 74, left hemisphere 115.1
2219 Male, age 76, both hemispheres 102.1
2828 Female, age 72, unknown 95.9
2586 Male, age 75, left hemisphere 88.0
1833 Male, age 53, unknown 86.5
1827 Male, age 72, unknown 84.2
1870 Female, age 42, unknown 83.0
1830 Male, age 51, unknown 82.4
2411 Female, age 72, unknown 77.1
2019 Male, age 18, unknown 76.8
Dorsal raphe nucleus
nTPM: 89.0
2047 Male, age 72, unknown 95.7
2298 Female, age 72, unknown 94.7
2750 Male, age 76, both hemispheres 94.7
2016 Female, age 72, unknown 81.4
1828 Male, age 53, unknown 78.4
Inferior colliculus
nTPM: 75.9
1890 Male, age 53, unknown 83.0
2097 Female, age 72, unknown 74.1
2849 Male, age 72, unknown 73.3
1848 Female, age 42, unknown 73.1
Median raphe nucleus
nTPM: 97.4
2220 Male, age 76, midline 97.4
Pedunculopontine tegmental nucleus
nTPM: 106.5
2338 Male, age 61, both hemispheres 155.3
1921 Female, age 85, both hemispheres 83.7
2334 Male, age 80, both hemispheres 80.5
Periaquaductal grey, anterior
nTPM: 91.0
1795 Male, age 51, unknown 100.5
1947 Male, age 18, unknown 99.2
2502 Female, age 75, unknown 73.3
Periaquaductal grey, dorsal
nTPM: 86.0
1840 Male, age 53, unknown 96.0
2850 Male, age 76, both hemispheres 90.1
2464 Female, age 72, unknown 79.4
1831 Male, age 72, unknown 78.6
Periaquaductal grey, lateral
nTPM: 84.8
2272 Male, age 74, both hemispheres 90.4
2140 Male, age 76, both hemispheres 83.9
2053 Male, age 18, unknown 80.1
Pretectal area
nTPM: 87.9
1817 Female, age 42, unknown 108.7
2007 Male, age 72, unknown 93.9
1815 Male, age 53, unknown 93.7
2825 Male, age 18, unknown 93.0
2224 Female, age 72, unknown 91.3
1816 Male, age 51, unknown 88.9
1944 Female, age 72, unknown 87.3
2273 Male, age 74, both hemispheres 79.9
2667 Female, age 75, unknown 77.3
2316 Male, age 76, right hemisphere 76.4
2407 Male, age 75, both hemispheres 76.3
Red nucleus
nTPM: 95.6
2725 Female, age 75, unknown 111.8
2823 Male, age 76, right hemisphere 108.3
2584 Male, age 75, left hemisphere 106.1
2227 Male, age 72, unknown 98.3
1821 Female, age 72, unknown 98.2
2503 Female, age 72, unknown 98.0
2769 Male, age 72, unknown 96.9
1865 Male, age 51, unknown 94.5
1904 Male, age 53, unknown 91.0
1954 Female, age 42, unknown 90.1
2588 Male, age 74, left hemisphere 78.3
2785 Male, age 18, unknown 75.2
Substantia nigra
nTPM: 152.8
1851 Male, age 51, unknown 202.9
2699 Male, age 18, unknown 198.7
2590 Female, age 75, unknown 187.2
1916 Female, age 42, unknown 183.9
2409 Female, age 72, unknown 175.0
2665 Male, age 74, both hemispheres 131.2
2241 Male, age 72, unknown 124.0
2583 Male, age 75, right hemisphere 122.4
1889 Female, age 72, unknown 111.0
1941 Male, age 53, unknown 91.6
Superior colliculus
nTPM: 84.0
2587 Male, age 74, left hemisphere 97.2
2261 Male, age 18, unknown 91.0
1796 Male, age 53, unknown 89.8
2087 Female, age 72, unknown 89.3
2668 Female, age 75, unknown 87.8
1995 Male, age 72, unknown 86.4
1895 Male, age 76, right hemisphere 80.7
1913 Female, age 42, unknown 76.0
1839 Male, age 51, unknown 71.0
2664 Male, age 75, both hemispheres 70.6
Ventral tegmental area
nTPM: 112.4
1915 Female, age 42, unknown 156.2
2021 Male, age 53, unknown 125.1
2410 Female, age 72, unknown 114.7
2218 Male, age 76, both hemispheres 99.1
1942 Male, age 51, unknown 98.5
2223 Female, age 72, unknown 81.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 747.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 747.6
Samples: 139

Max nTPM: 2420.4
Min nTPM: 57.2
Std nTPM: 486.0
Median nTPM: 659.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2420.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2369.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2023.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 2011.5
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 1975.0
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 1923.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1840.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 1743.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1686.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1676.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1661.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.7
FF:10158-103A5 76 years, female 30.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.7
Samples: 4

Max nTPM: 22.7
Min nTPM: 19.6
Sample A Male 19.6
Sample B Male 20.1
Sample C Female 20.5
Sample D Female 22.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
68910959 Antisense, RP_041214_01_G03, Mouse strain C57BL/6J (56 days, male) 2.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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