MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:13.7 nTPM
HPA:13.7 nTPM
GTEx:31.1 nTPM
FANTOM5:8.9 Scaled Tags Per Million
Pig:3.3 nTPM
Mouse:5.9 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 13.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.0
1827 Male, age 72, unknown 12.8
2828 Female, age 72, unknown 12.6
2019 Male, age 18, unknown 11.9
2586 Male, age 75, left hemisphere 11.4
2666 Male, age 74, left hemisphere 11.4
2411 Female, age 72, unknown 11.3
1870 Female, age 42, unknown 10.3
1833 Male, age 53, unknown 10.0
1830 Male, age 51, unknown 9.4
2219 Male, age 76, both hemispheres 8.6
Dorsal raphe nucleus
nTPM: 11.0
2298 Female, age 72, unknown 12.6
1828 Male, age 53, unknown 11.7
2047 Male, age 72, unknown 10.9
2016 Female, age 72, unknown 10.8
2750 Male, age 76, both hemispheres 9.2
Inferior colliculus
nTPM: 11.0
1848 Female, age 42, unknown 12.5
2849 Male, age 72, unknown 10.8
2097 Female, age 72, unknown 10.6
1890 Male, age 53, unknown 10.2
Median raphe nucleus
nTPM: 8.9
2220 Male, age 76, midline 8.9
Pedunculopontine tegmental nucleus
nTPM: 10.0
2334 Male, age 80, both hemispheres 10.6
1921 Female, age 85, both hemispheres 10.4
2338 Male, age 61, both hemispheres 9.1
Periaquaductal grey, anterior
nTPM: 13.7
1947 Male, age 18, unknown 16.1
1795 Male, age 51, unknown 13.2
2502 Female, age 75, unknown 11.8
Periaquaductal grey, dorsal
nTPM: 11.5
2464 Female, age 72, unknown 12.5
2850 Male, age 76, both hemispheres 12.3
1831 Male, age 72, unknown 11.0
1840 Male, age 53, unknown 10.3
Periaquaductal grey, lateral
nTPM: 11.5
2140 Male, age 76, both hemispheres 13.2
2272 Male, age 74, both hemispheres 10.9
2053 Male, age 18, unknown 10.4
Pretectal area
nTPM: 13.0
2007 Male, age 72, unknown 16.8
1815 Male, age 53, unknown 14.4
1816 Male, age 51, unknown 14.3
2667 Female, age 75, unknown 14.1
1817 Female, age 42, unknown 13.8
1944 Female, age 72, unknown 13.6
2316 Male, age 76, right hemisphere 13.0
2224 Female, age 72, unknown 12.6
2273 Male, age 74, both hemispheres 10.7
2825 Male, age 18, unknown 10.2
2407 Male, age 75, both hemispheres 9.4
Red nucleus
nTPM: 11.8
2503 Female, age 72, unknown 14.1
2725 Female, age 75, unknown 13.4
2785 Male, age 18, unknown 12.9
1954 Female, age 42, unknown 12.1
2588 Male, age 74, left hemisphere 11.7
2769 Male, age 72, unknown 11.4
1821 Female, age 72, unknown 11.3
1865 Male, age 51, unknown 11.3
2823 Male, age 76, right hemisphere 11.2
2227 Male, age 72, unknown 11.1
2584 Male, age 75, left hemisphere 10.3
1904 Male, age 53, unknown 10.2
Substantia nigra
nTPM: 11.3
1851 Male, age 51, unknown 13.5
1889 Female, age 72, unknown 13.3
1916 Female, age 42, unknown 12.2
2583 Male, age 75, right hemisphere 11.4
2590 Female, age 75, unknown 11.4
2665 Male, age 74, both hemispheres 11.4
2409 Female, age 72, unknown 10.8
2699 Male, age 18, unknown 10.0
1941 Male, age 53, unknown 9.7
2241 Male, age 72, unknown 9.2
Superior colliculus
nTPM: 11.7
1796 Male, age 53, unknown 16.5
2261 Male, age 18, unknown 12.6
2087 Female, age 72, unknown 12.4
2664 Male, age 75, both hemispheres 11.9
1839 Male, age 51, unknown 11.3
1995 Male, age 72, unknown 10.9
1913 Female, age 42, unknown 10.6
1895 Male, age 76, right hemisphere 10.5
2668 Female, age 75, unknown 10.3
2587 Male, age 74, left hemisphere 9.9
Ventral tegmental area
nTPM: 10.3
2410 Female, age 72, unknown 11.9
1915 Female, age 42, unknown 11.7
2021 Male, age 53, unknown 10.7
1942 Male, age 51, unknown 9.6
2218 Male, age 76, both hemispheres 9.1
2223 Female, age 72, unknown 9.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.1
Samples: 139

Max nTPM: 174.1
Min nTPM: 3.1
Std nTPM: 30.1
Median nTPM: 21.5
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 174.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 133.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 132.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 127.9
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 107.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 103.2
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 98.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 98.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 89.5
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 85.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 83.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8.9
FF:10158-103A5 76 years, female 8.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 3.3
Pig sample Sample description nTPM
Midbrain
nTPM: 3.1
Samples: 4

Max nTPM: 4.0
Min nTPM: 1.8
Sample A Female 3.9
Sample B Female 1.8
Sample C Male 4.0
Sample D Male 2.5
Periaqueductal gray
nTPM: 1.9
Samples: 3

Max nTPM: 2.6
Min nTPM: 1.5
Sample B Female 1.5
Sample C Male 2.6
Sample D Male 1.5
Substantia nigra
nTPM: 2.7
Samples: 4

Max nTPM: 3.7
Min nTPM: 1.6
Sample A Female 3.7
Sample B Female 3.2
Sample C Male 2.2
Sample D Male 1.6
Superior colliculi
nTPM: 3.3
Samples: 4

Max nTPM: 4.0
Min nTPM: 3.0
Sample A Female 3.1
Sample B Female 3.1
Sample C Male 4.0
Sample D Male 3.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 5.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.9
Samples: 4

Max nTPM: 8.5
Min nTPM: 4.2
Sample A Male 6.4
Sample B Male 4.2
Sample C Female 4.6
Sample D Female 8.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
70634407 Antisense, RP_050725_01_F11, Mouse strain C57BL/6J (56 days, male) 0.8
79749608 Antisense, RP_071204_02_D09, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.