BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:4.1 nTPM
HPA:4.1 nTPM
GTEx:4.2 nTPM
FANTOM5:23.6 Scaled Tags Per Million
Pig:10.9 nTPM
Mouse:20.1 nTPM
Allen mouse:0.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA003233
Glial cells Medium
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 4.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.8
1857 Female, age 85, left hemisphere 4.7
2290 Female, age 72, unknown 4.3
1854 Male, age 80, left hemisphere 3.9
2846 Female, age 79, unknown 3.8
2288 Male, age 75, left hemisphere 3.7
2481 Female, age 94, left hemisphere 3.6
2289 Male, age 61, right hemisphere 3.1
1781 Male, age 74, unknown 3.0
Claustrum
nTPM: 2.9
2392 Female, age 94, both hemispheres 3.8
2196 Female, age 79, unknown 3.5
1956 Male, age 74, unknown 2.8
2198 Male, age 80, both hemispheres 2.8
2491 Male, age 75, both hemispheres 2.8
2568 Male, age 61, both hemispheres 2.8
2284 Female, age 91, both hemispheres 2.7
2292 Female, age 85, both hemispheres 2.6
2645 Female, age 72, unknown 2.3
Globus pallidus, externus
nTPM: 2.5
2395 Male, age 75, both hemispheres 3.1
1996 Male, age 80, right hemisphere 2.9
2772 Female, age 79, unknown 2.6
2646 Male, age 61, right hemisphere 2.2
2567 Female, age 72, unknown 1.7
Globus pallidus, internus
nTPM: 3.1
2287 Male, age 75, right hemisphere 4.3
2778 Female, age 91, both hemispheres 3.6
2111 Female, age 85, right hemisphere 3.2
2483 Female, age 94, right hemisphere 3.0
1818 Male, age 74, unknown 2.9
2037 Male, age 80, right hemisphere 2.6
2566 Female, age 72, unknown 2.3
Nucleus accumbens
nTPM: 4.1
1856 Female, age 91, right hemisphere 4.8
1806 Female, age 85, left hemisphere 4.3
2391 Female, age 94, left hemisphere 4.3
2698 Female, age 72, unknown 4.3
2824 Male, age 61, right hemisphere 4.3
2286 Male, age 75, left hemisphere 4.1
1783 Male, age 74, unknown 3.8
2732 Male, age 80, right hemisphere 3.0
Nucleus basalis of Meynert
nTPM: 3.2
2393 Male, age 80, right hemisphere 3.9
2821 Male, age 75, both hemispheres 3.4
2484 Female, age 94, left hemisphere 3.3
2569 Male, age 61, both hemispheres 2.1
Nucleus of the diagonal band
nTPM: 3.9
1979 Male, age 74, unknown 4.6
1812 Female, age 91, both hemispheres 4.0
2195 Female, age 85, both hemispheres 4.0
2775 Male, age 80, right hemisphere 3.6
2029 Male, age 61, right hemisphere 3.3
Olfactory tubercle
nTPM: 3.6
1846 Male, age 80, right hemisphere 4.3
2487 Female, age 94, left hemisphere 3.7
2856 Male, age 75, right hemisphere 3.5
1998 Female, age 91, both hemispheres 2.9
Putamen
nTPM: 3.4
1838 Male, age 80, right hemisphere 4.3
1937 Female, age 91, right hemisphere 4.0
1829 Male, age 74, unknown 3.4
2466 Female, age 79, unknown 3.4
2482 Female, age 94, left hemisphere 3.3
2647 Male, age 75, left hemisphere 2.8
2489 Female, age 72, unknown 2.6
Septal nuclei
nTPM: 3.5
2031 Female, age 72, unknown 3.7
2199 Male, age 80, right hemisphere 3.7
2394 Male, age 61, left hemisphere 3.7
2009 Female, age 91, both hemispheres 3.6
1960 Male, age 74, unknown 3.5
2629 Female, age 94, right hemisphere 3.3
2059 Female, age 85, both hemispheres 2.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 4.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3.7
Samples: 246

Max nTPM: 9.7
Min nTPM: 2.1
Std nTPM: 0.8
Median nTPM: 3.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 9.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 6.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 6.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 5.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 5.8
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 5.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 5.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 5.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 5.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 5.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 5.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 4.2
Samples: 246

Max nTPM: 8.4
Min nTPM: 1.8
Std nTPM: 0.9
Median nTPM: 4.2
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 8.4
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 7.1
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 6.9
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 6.9
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 6.8
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 6.6
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 6.3
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 6.1
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 6.1
GTEX-ZVZQ-0011-R6b-SM-57WAY 60-69 years, female 6.1
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 6.0
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Brain - Putamen (basal ganglia)
Average nTPM: 3.4
Samples: 205

Max nTPM: 6.3
Min nTPM: 1.6
Std nTPM: 0.6
Median nTPM: 3.4
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 6.3
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 5.9
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 5.5
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 5.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 4.9
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 4.8
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 4.8
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 4.7
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 4.6
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 4.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 4.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 22.8
FF:10164-103B2 76 years, female 22.8
Globus pallidus
Scaled Tags Per Million: 14.4
FF:10161-103A8 76 years, female 18.6
FF:10175-103C4 60 years, female 10.2
Nucleus accumbens
Scaled Tags Per Million: 15.5
FF:10037-101F1 23-56 years, mixed 15.5
Putamen
Scaled Tags Per Million: 23.6
FF:10176-103C5 60 years, female 23.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 10.9
Pig sample Sample description nTPM
Caudate
nTPM: 11.0
Samples: 4

Max nTPM: 11.9
Min nTPM: 9.9
Sample A Female 11.3
Sample B Female 9.9
Sample C Male 11.9
Sample D Male 10.7
Putamen
nTPM: 10.1
Samples: 4

Max nTPM: 14.2
Min nTPM: 6.5
Sample A Female 6.5
Sample B Female 10.2
Sample C Male 14.2
Sample D Male 9.6
Septum
nTPM: 9.0
Samples: 4

Max nTPM: 11.1
Min nTPM: 6.4
Sample A Female 11.1
Sample B Female 9.8
Sample C Male 6.4
Sample D Male 8.6
Ventral pallidum
nTPM: 8.8
Samples: 4

Max nTPM: 13.4
Min nTPM: 5.1
Sample A Female 13.4
Sample B Female 8.6
Sample C Male 5.1
Sample D Male 7.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 20.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 18.9
Samples: 4

Max nTPM: 19.8
Min nTPM: 17.8
Sample A Male 19.2
Sample B Male 19.8
Sample C Female 18.7
Sample D Female 17.8
Septum
nTPM: 20.1
Samples: 4

Max nTPM: 22.8
Min nTPM: 16.5
Sample A Male 16.5
Sample B Male 22.8
Sample C Female 20.2
Sample D Female 21.0
Ventral forebrain
nTPM: 17.1
Samples: 4

Max nTPM: 18.6
Min nTPM: 16.1
Sample A Male 17.2
Sample B Male 18.6
Sample C Female 16.1
Sample D Female 16.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
70546075 Antisense, RP_050623_03_E09, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.1
70546075 Antisense, RP_050623_03_E09, Mouse strain C57BL/6J (56 days, male) 0.1

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