MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:610.5 nTPM
HPA:610.5 nTPM
GTEx:759.6 nTPM
FANTOM5:141.3 Scaled Tags Per Million
Pig:0.0 nTPM
Mouse:206.5 nTPM
Allen mouse:18.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 610.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 599.7
2586 Male, age 75, left hemisphere 629.0
2666 Male, age 74, left hemisphere 619.5
1870 Female, age 42, unknown 614.8
1827 Male, age 72, unknown 604.7
2828 Female, age 72, unknown 604.4
1833 Male, age 53, unknown 594.0
2411 Female, age 72, unknown 587.5
1830 Male, age 51, unknown 584.7
2019 Male, age 18, unknown 579.4
2219 Male, age 76, both hemispheres 578.7
Dorsal raphe nucleus
nTPM: 594.9
2298 Female, age 72, unknown 601.6
2750 Male, age 76, both hemispheres 598.5
2016 Female, age 72, unknown 594.0
2047 Male, age 72, unknown 590.8
1828 Male, age 53, unknown 589.7
Inferior colliculus
nTPM: 595.8
2849 Male, age 72, unknown 609.4
1890 Male, age 53, unknown 594.7
2097 Female, age 72, unknown 593.1
1848 Female, age 42, unknown 586.1
Median raphe nucleus
nTPM: 598.8
2220 Male, age 76, midline 598.8
Pedunculopontine tegmental nucleus
nTPM: 608.3
2338 Male, age 61, both hemispheres 631.6
2334 Male, age 80, both hemispheres 607.8
1921 Female, age 85, both hemispheres 585.5
Periaquaductal grey, anterior
nTPM: 592.3
2502 Female, age 75, unknown 595.1
1947 Male, age 18, unknown 591.3
1795 Male, age 51, unknown 590.6
Periaquaductal grey, dorsal
nTPM: 599.2
1840 Male, age 53, unknown 618.9
2850 Male, age 76, both hemispheres 605.4
1831 Male, age 72, unknown 594.0
2464 Female, age 72, unknown 578.6
Periaquaductal grey, lateral
nTPM: 589.3
2053 Male, age 18, unknown 602.4
2140 Male, age 76, both hemispheres 595.7
2272 Male, age 74, both hemispheres 569.7
Pretectal area
nTPM: 597.3
1817 Female, age 42, unknown 615.3
2007 Male, age 72, unknown 605.7
2316 Male, age 76, right hemisphere 605.3
1815 Male, age 53, unknown 604.5
2825 Male, age 18, unknown 603.9
1816 Male, age 51, unknown 598.4
2224 Female, age 72, unknown 598.3
1944 Female, age 72, unknown 598.2
2667 Female, age 75, unknown 598.0
2407 Male, age 75, both hemispheres 579.1
2273 Male, age 74, both hemispheres 563.3
Red nucleus
nTPM: 595.7
2588 Male, age 74, left hemisphere 610.3
2503 Female, age 72, unknown 610.0
1865 Male, age 51, unknown 607.8
2584 Male, age 75, left hemisphere 601.0
2725 Female, age 75, unknown 600.3
2785 Male, age 18, unknown 596.3
1821 Female, age 72, unknown 594.4
2769 Male, age 72, unknown 594.0
2227 Male, age 72, unknown 586.8
1904 Male, age 53, unknown 585.9
2823 Male, age 76, right hemisphere 581.1
1954 Female, age 42, unknown 580.6
Substantia nigra
nTPM: 610.5
2665 Male, age 74, both hemispheres 634.6
1851 Male, age 51, unknown 634.0
2699 Male, age 18, unknown 626.3
2409 Female, age 72, unknown 622.9
1916 Female, age 42, unknown 612.4
2241 Male, age 72, unknown 599.1
2583 Male, age 75, right hemisphere 598.6
1889 Female, age 72, unknown 598.4
1941 Male, age 53, unknown 589.5
2590 Female, age 75, unknown 589.5
Superior colliculus
nTPM: 603.1
2587 Male, age 74, left hemisphere 621.4
2668 Female, age 75, unknown 613.7
1913 Female, age 42, unknown 609.8
1796 Male, age 53, unknown 606.2
1995 Male, age 72, unknown 602.8
2664 Male, age 75, both hemispheres 600.5
1895 Male, age 76, right hemisphere 598.0
1839 Male, age 51, unknown 597.2
2087 Female, age 72, unknown 594.0
2261 Male, age 18, unknown 587.6
Ventral tegmental area
nTPM: 602.1
1915 Female, age 42, unknown 622.8
2223 Female, age 72, unknown 615.3
2021 Male, age 53, unknown 612.2
2218 Male, age 76, both hemispheres 589.4
1942 Male, age 51, unknown 588.6
2410 Female, age 72, unknown 583.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 759.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 759.6
Samples: 139

Max nTPM: 2950.6
Min nTPM: 278.2
Std nTPM: 376.1
Median nTPM: 668.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2950.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2412.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2185.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1816.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1705.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1480.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1457.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1265.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1257.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1174.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1145.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 141.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 141.3
FF:10158-103A5 76 years, female 141.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 0.0
Pig sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Periaqueductal gray
nTPM: 0.0
Samples: 3

Max nTPM: 0.0
Min nTPM: 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Substantia nigra
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.2
Superior colliculi
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 206.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 206.5
Samples: 4

Max nTPM: 299.3
Min nTPM: 150.6
Sample A Male 299.3
Sample B Male 151.8
Sample C Female 150.6
Sample D Female 224.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 18.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 18.2
68410536 Antisense, RP_041214_02_B01, Mouse strain C57BL/6J (56 days, male) 18.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.