BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:53.1 nTPM
HPA:53.1 nTPM
GTEx:48.1 nTPM
FANTOM5:85.6 Scaled Tags Per Million
Pig:113.9 nTPM
Mouse:64.0 nTPM
Allen mouse:3.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA036814
Glial cells Not detected
Neuronal cells Not detected


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 53.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 50.2
1857 Female, age 85, left hemisphere 70.2
2289 Male, age 61, right hemisphere 65.1
1854 Male, age 80, left hemisphere 59.2
1781 Male, age 74, unknown 45.3
2288 Male, age 75, left hemisphere 44.9
2290 Female, age 72, unknown 43.5
2481 Female, age 94, left hemisphere 38.0
2846 Female, age 79, unknown 35.3
Claustrum
nTPM: 41.8
2568 Male, age 61, both hemispheres 56.7
2198 Male, age 80, both hemispheres 49.9
2491 Male, age 75, both hemispheres 43.3
2292 Female, age 85, both hemispheres 42.9
2645 Female, age 72, unknown 42.2
1956 Male, age 74, unknown 41.4
2284 Female, age 91, both hemispheres 35.5
2392 Female, age 94, both hemispheres 33.7
2196 Female, age 79, unknown 31.1
Globus pallidus, externus
nTPM: 19.2
2646 Male, age 61, right hemisphere 37.8
2395 Male, age 75, both hemispheres 19.5
2567 Female, age 72, unknown 15.1
1996 Male, age 80, right hemisphere 12.7
2772 Female, age 79, unknown 10.8
Globus pallidus, internus
nTPM: 18.8
2111 Female, age 85, right hemisphere 33.9
2483 Female, age 94, right hemisphere 24.4
2778 Female, age 91, both hemispheres 20.3
2287 Male, age 75, right hemisphere 15.9
2566 Female, age 72, unknown 14.0
2037 Male, age 80, right hemisphere 12.8
1818 Male, age 74, unknown 10.2
Nucleus accumbens
nTPM: 49.1
1806 Female, age 85, left hemisphere 74.7
2286 Male, age 75, left hemisphere 61.2
2824 Male, age 61, right hemisphere 59.1
1783 Male, age 74, unknown 56.9
2732 Male, age 80, right hemisphere 42.7
2698 Female, age 72, unknown 35.6
2391 Female, age 94, left hemisphere 34.1
1856 Female, age 91, right hemisphere 28.6
Nucleus basalis of Meynert
nTPM: 38.9
2569 Male, age 61, both hemispheres 51.8
2484 Female, age 94, left hemisphere 43.2
2393 Male, age 80, right hemisphere 33.6
2821 Male, age 75, both hemispheres 27.0
Nucleus of the diagonal band
nTPM: 49.1
2195 Female, age 85, both hemispheres 62.5
2775 Male, age 80, right hemisphere 53.6
2029 Male, age 61, right hemisphere 50.3
1812 Female, age 91, both hemispheres 39.9
1979 Male, age 74, unknown 39.1
Olfactory tubercle
nTPM: 49.3
2856 Male, age 75, right hemisphere 71.4
1846 Male, age 80, right hemisphere 51.7
2487 Female, age 94, left hemisphere 42.3
1998 Female, age 91, both hemispheres 31.7
Putamen
nTPM: 45.5
2647 Male, age 75, left hemisphere 97.8
1829 Male, age 74, unknown 47.2
2489 Female, age 72, unknown 40.9
1838 Male, age 80, right hemisphere 38.1
2466 Female, age 79, unknown 37.0
2482 Female, age 94, left hemisphere 36.4
1937 Female, age 91, right hemisphere 21.1
Septal nuclei
nTPM: 53.1
1960 Male, age 74, unknown 81.5
2059 Female, age 85, both hemispheres 78.7
2629 Female, age 94, right hemisphere 48.8
2199 Male, age 80, right hemisphere 45.8
2031 Female, age 72, unknown 42.5
2394 Male, age 61, left hemisphere 38.0
2009 Female, age 91, both hemispheres 36.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 48.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 44.6
Samples: 246

Max nTPM: 117.3
Min nTPM: 4.8
Std nTPM: 17.4
Median nTPM: 44.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 117.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 109.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 98.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 88.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 87.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 82.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 82.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 79.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 77.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 76.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 75.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 48.1
Samples: 246

Max nTPM: 98.1
Min nTPM: 4.2
Std nTPM: 20.0
Median nTPM: 47.0
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 98.1
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 96.6
GTEX-1GF9V-0011-R6b-SM-CJI2Q 60-69 years, male 95.2
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 92.1
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 88.2
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 88.2
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 86.4
GTEX-13SLX-0011-R6a-SM-5PNX4 50-59 years, female 85.8
GTEX-1F6I4-0011-R6a-SM-CE6R4 60-69 years, male 83.7
GTEX-13OVL-0011-R6a-SM-5L3G4 50-59 years, male 83.6
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 83.6
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Brain - Putamen (basal ganglia)
Average nTPM: 40.4
Samples: 205

Max nTPM: 80.0
Min nTPM: 7.5
Std nTPM: 15.1
Median nTPM: 40.4
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 80.0
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 76.6
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 75.1
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 73.0
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 71.5
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 71.4
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 70.3
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 69.6
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 68.5
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 68.1
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 67.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 85.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 33.6
FF:10164-103B2 76 years, female 33.6
Globus pallidus
Scaled Tags Per Million: 26.3
FF:10175-103C4 60 years, female 35.5
FF:10161-103A8 76 years, female 17.1
Nucleus accumbens
Scaled Tags Per Million: 85.6
FF:10037-101F1 23-56 years, mixed 85.6
Putamen
Scaled Tags Per Million: 68.3
FF:10176-103C5 60 years, female 68.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 113.9
Pig sample Sample description nTPM
Caudate
nTPM: 107.6
Samples: 4

Max nTPM: 133.9
Min nTPM: 77.6
Sample A Female 77.6
Sample B Female 104.3
Sample C Male 133.9
Sample D Male 114.7
Putamen
nTPM: 113.9
Samples: 4

Max nTPM: 135.6
Min nTPM: 93.9
Sample A Female 104.5
Sample B Female 93.9
Sample C Male 135.6
Sample D Male 121.5
Septum
nTPM: 77.5
Samples: 4

Max nTPM: 90.9
Min nTPM: 49.4
Sample A Female 87.2
Sample B Female 82.4
Sample C Male 90.9
Sample D Male 49.4
Ventral pallidum
nTPM: 104.0
Samples: 4

Max nTPM: 118.8
Min nTPM: 87.2
Sample A Female 106.8
Sample B Female 87.2
Sample C Male 118.8
Sample D Male 103.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 64.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 64.0
Samples: 4

Max nTPM: 71.8
Min nTPM: 57.5
Sample A Male 57.5
Sample B Male 63.4
Sample C Female 63.1
Sample D Female 71.8
Septum
nTPM: 43.5
Samples: 4

Max nTPM: 47.0
Min nTPM: 39.7
Sample A Male 43.8
Sample B Male 47.0
Sample C Female 39.7
Sample D Female 43.4
Ventral forebrain
nTPM: 61.0
Samples: 4

Max nTPM: 63.8
Min nTPM: 55.5
Sample A Male 62.2
Sample B Male 55.5
Sample C Female 62.6
Sample D Female 63.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.2
69608154 Antisense, RP_050426_03_F07, Mouse strain C57BL/6J (56 days, male) 3.2
Pallidum
Expression energy: 1.6
69608154 Antisense, RP_050426_03_F07, Mouse strain C57BL/6J (56 days, male) 1.6

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The Human Protein Atlas

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