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TISSUE PRIMARY DATA PONS AND MEDULLA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
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VALIDATION
Dictionary
Tissue proteome
PONS AND MEDULLA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:38.1 nTPM
HPA:38.1 nTPM
FANTOM5:57.5 Scaled Tags Per Million
Pig:90.7 nTPM
Mouse:14.9 nTPM
Allen mouse:0.3 Expression energy

PONS AND MEDULLA - HPA Brain RNA-seq
Max nTPM 38.1
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 17.1
2188 Female, age 91, both hemispheres 23.4
1984 Male, age 76, both hemispheres 21.5
2090 Male, age 80, both hemispheres 12.1
2301 Female, age 85, both hemispheres 11.4
Area postrema
nTPM: 23.0
2799 Male, age 61, both hemispheres 30.4
2054 Male, age 76, both hemispheres 21.4
2306 Male, age 80, both hemispheres 17.3
Cuneate nuclei
nTPM: 24.6
2131 Male, age 76, both hemispheres 34.6
2376 Male, age 61, both hemispheres 20.4
2381 Male, age 80, both hemispheres 18.9
Dorsal cochlear nucleus
nTPM: 19.0
2370 Male, age 61, both hemispheres 23.4
2058 Male, age 76, both hemispheres 21.8
2187 Female, age 91, both hemispheres 18.6
2802 Male, age 74, right hemisphere 18.5
2378 Male, age 80, both hemispheres 12.5
Dorsal medullary reticular nucleus
nTPM: 20.3
2088 Male, age 76, both hemispheres 21.5
2040 Female, age 85, both hemispheres 20.5
2373 Male, age 61, both hemispheres 18.9
Dorsal motor vagal complex
nTPM: 24.1
2797 Male, age 61, both hemispheres 36.2
2185 Male, age 76, both hemispheres 31.5
2844 Male, age 55, unknown 28.8
2643 Male, age 74, both hemispheres 27.5
2000 Male, age 74, unknown 25.2
2133 Female, age 91, both hemispheres 20.0
2813 Female, age 72, unknown 15.2
2807 Female, age 85, both hemispheres 8.5
Dorsal tegmental nucleus
nTPM: 22.3
2083 Male, age 80, both hemispheres 26.2
1936 Male, age 76, left hemisphere 23.4
2358 Male, age 61, both hemispheres 23.1
2326 Male, age 74, both hemispheres 16.7
Dorsolateral tegmental area
nTPM: 22.9
2751 Female, age 85, both hemispheres 37.6
2654 Male, age 80, both hemispheres 27.1
2141 Male, age 76, both hemispheres 21.5
2337 Male, age 61, both hemispheres 16.7
2360 Male, age 74, both hemispheres 11.5
Gigantocellular reticular nuclei, medullary
nTPM: 22.9
2387 Female, age 91, both hemispheres 37.8
1876 Female, age 85, both hemispheres 25.6
2462 Male, age 74, both hemispheres 24.7
2022 Male, age 76, right hemisphere 21.4
2310 Male, age 80, both hemispheres 16.2
2314 Male, age 61, both hemispheres 11.8
Gigantocellular reticular nuclei, pars
nTPM: 24.0
2168 Male, age 76, both hemispheres 35.8
2084 Female, age 85, both hemispheres 28.9
2336 Male, age 61, both hemispheres 19.9
2330 Male, age 80, both hemispheres 17.8
2706 Male, age 80, both hemispheres 17.5
Inferior olive
nTPM: 24.2
2563 Male, age 74, both hemispheres 33.6
2085 Female, age 85, both hemispheres 28.9
2379 Male, age 80, both hemispheres 23.8
2628 Female, age 91, both hemispheres 23.5
2178 Male, age 61, both hemispheres 11.2
Kolliker-Fuse nucleus
nTPM: 25.6
2793 Female, age 91, left hemisphere 31.2
2163 Male, age 80, both hemispheres 29.8
2315 Male, age 76, right hemisphere 15.8
Lateral lemniscal nuclei
nTPM: 38.1
2169 Male, age 76, both hemispheres 43.6
2746 Female, age 85, left hemisphere 40.7
2453 Male, age 74, right hemisphere 40.6
2036 Male, age 80, both hemispheres 34.7
2320 Female, age 91, left hemisphere 31.0
Lateral medullary reticular nucleus
nTPM: 15.3
2044 Male, age 76, both hemispheres 21.1
2804 Female, age 91, both hemispheres 18.6
2852 Male, age 80, both hemispheres 18.5
2190 Female, age 85, both hemispheres 14.1
2374 Male, age 61, both hemispheres 12.9
2305 Male, age 74, both hemispheres 6.5
Lateral parabrachial nucleus
nTPM: 22.0
2139 Female, age 85, right hemisphere 30.7
2792 Male, age 76, both hemispheres 22.8
2013 Male, age 80, both hemispheres 21.3
2790 Male, age 61, both hemispheres 13.3
Lateral vestibular nucleus
nTPM: 23.7
2184 Male, age 76, both hemispheres 33.9
2311 Male, age 80, both hemispheres 13.6
Locus coeruleus
nTPM: 25.3
2014 Male, age 55, unknown 32.7
2317 Female, age 72, unknown 29.6
1980 Male, age 76, both hemispheres 27.7
2123 Female, age 91, both hemispheres 26.2
2720 Male, age 74, both hemispheres 22.2
2788 Male, age 74, unknown 20.8
2162 Male, age 80, both hemispheres 17.7
Medial olivary nucleus
nTPM: 15.6
2851 Male, age 80, both hemispheres 24.3
1962 Male, age 76, both hemispheres 18.6
2138 Female, age 91, both hemispheres 17.0
1943 Male, age 61, both hemispheres 2.3
Medial parabrachial nucleus
nTPM: 26.5
2170 Female, age 91, both hemispheres 31.0
2463 Female, age 85, right hemisphere 30.0
2786 Male, age 76, both hemispheres 25.7
2854 Male, age 80, both hemispheres 24.4
2156 Male, age 61, both hemispheres 21.5
Medial periolivary nuclei
nTPM: 28.2
2063 Male, age 76, both hemispheres 34.5
2171 Female, age 85, both hemispheres 30.6
2458 Female, age 91, both hemispheres 28.8
2791 Male, age 74, right hemisphere 27.5
2081 Male, age 80, both hemispheres 19.5
Medial vestibular nucleus
nTPM: 22.1
2624 Male, age 61, both hemispheres 30.8
2803 Female, age 91, both hemispheres 26.7
2093 Male, age 80, both hemispheres 26.0
2134 Male, age 76, both hemispheres 20.9
2801 Male, age 74, both hemispheres 18.8
2743 Female, age 85, both hemispheres 9.7
Motor facial nucleus
nTPM: 32.5
2795 Female, age 91, both hemispheres 64.0
2062 Male, age 76, both hemispheres 48.5
2327 Male, age 80, both hemispheres 23.1
2365 Male, age 74, right hemisphere 23.0
2126 Male, age 61, both hemispheres 19.9
2697 Female, age 85, both hemispheres 16.2
Motor hypoglossal nucleus
nTPM: 17.9
2277 Male, age 76, both hemispheres 23.5
2461 Male, age 61, both hemispheres 23.0
2125 Female, age 91, both hemispheres 22.4
2182 Male, age 80, both hemispheres 13.5
2132 Female, age 85, both hemispheres 7.3
Motor trigeminal nucleus
nTPM: 28.7
2335 Male, age 61, both hemispheres 36.5
2079 Male, age 80, both hemispheres 34.6
2560 Male, age 74, both hemispheres 27.6
2309 Male, age 76, both hemispheres 26.2
2321 Female, age 91, both hemispheres 18.7
Nuclei of the trapezoid body
nTPM: 34.0
2368 Female, age 91, both hemispheres 45.7
1983 Male, age 76, both hemispheres 39.9
2735 Female, age 85, both hemispheres 36.4
2159 Male, age 61, both hemispheres 28.3
2166 Male, age 80, both hemispheres 19.5
Nucleus ambiguus
nTPM: 17.2
2071 Male, age 76, both hemispheres 22.2
2096 Female, age 85, both hemispheres 12.2
Nucleus cuneatus
nTPM: 27.1
2564 Male, age 74, both hemispheres 47.0
2562 Male, age 61, both hemispheres 32.6
2805 Female, age 91, both hemispheres 27.2
2100 Male, age 76, both hemispheres 25.2
2380 Male, age 80, both hemispheres 17.7
2808 Female, age 85, both hemispheres 13.1
Nucleus gracilis
nTPM: 20.7
2627 Male, age 74, both hemispheres 34.9
2299 Female, age 85, both hemispheres 14.1
2382 Male, age 80, both hemispheres 13.0
Nucleus raphe magnus
nTPM: 30.1
2051 Male, age 76, both hemispheres 37.5
2455 Male, age 74, both hemispheres 33.2
2459 Female, age 91, both hemispheres 32.3
2172 Female, age 85, both hemispheres 26.5
2160 Male, age 61, both hemispheres 25.6
2328 Male, age 80, both hemispheres 25.4
Nucleus raphe obscurus
nTPM: 12.0
2142 Male, age 76, midline 14.8
2800 Male, age 61, midline 12.1
2845 Female, age 85, midline 9.1
Nucleus raphe pallidus
nTPM: 14.3
2183 Male, age 80, midline 24.9
2145 Male, age 76, midline 16.5
1924 Male, age 61, midline 1.4
Nucleus tractus solitarii
nTPM: 14.2
2656 Male, age 76, both hemispheres 29.0
2144 Female, age 91, right hemisphere 10.9
2307 Male, age 80, both hemispheres 10.3
2191 Female, age 85, both hemispheres 6.6
Paramedian reticular nucleus
nTPM: 27.3
2313 Male, age 61, both hemispheres 37.6
2050 Female, age 85, both hemispheres 30.2
2057 Male, age 80, both hemispheres 26.6
2052 Male, age 76, both hemispheres 14.7
Parvicellular reticular nuclei
nTPM: 33.3
2558 Male, age 74, both hemispheres 36.1
2119 Male, age 80, both hemispheres 35.7
2095 Male, age 76, both hemispheres 28.0
Parvicellular reticular nuclei, medullary
nTPM: 22.3
2189 Female, age 91, both hemispheres 25.2
2181 Male, age 80, left hemisphere 22.2
2091 Female, age 85, both hemispheres 19.5
Peritrigeminal nucleus
nTPM: 18.4
2136 Male, age 76, both hemispheres 24.6
2067 Female, age 85, both hemispheres 16.6
2179 Male, age 61, both hemispheres 14.0
Pontine nuclei
nTPM: 31.7
1968 Male, age 76, left hemisphere 48.1
1863 Male, age 55, unknown 45.1
2787 Female, age 85, both hemispheres 43.3
2319 Female, age 91, both hemispheres 27.7
2115 Male, age 80, left hemisphere 24.6
2727 Male, age 61, right hemisphere 24.6
2109 Female, age 72, unknown 23.0
2454 Male, age 74, left hemisphere 17.1
Pontine raphe nucleus
nTPM: 33.6
2122 Female, age 85, midline 36.6
2853 Male, age 76, midline 30.7
Posteroventral cochlear nucleus
nTPM: 21.3
2371 Male, age 61, both hemispheres 25.1
2070 Male, age 76, both hemispheres 22.5
2752 Female, age 85, both hemispheres 20.0
2341 Male, age 80, both hemispheres 19.6
2135 Female, age 91, both hemispheres 19.4
Prepositus hypoglossal nucleus
nTPM: 11.0
2086 Male, age 80, both hemispheres 15.1
2855 Female, age 85, right hemisphere 7.0
Principal sensory trigeminal nucleus
nTPM: 26.5
2324 Male, age 76, both hemispheres 32.6
2008 Male, age 80, left hemisphere 27.5
2367 Female, age 91, left hemisphere 25.3
2158 Male, age 61, both hemispheres 20.4
Reticular pontine nucleus, caudal
nTPM: 30.9
2332 Male, age 80, right hemisphere 42.6
2092 Male, age 76, both hemispheres 35.6
2457 Female, age 91, both hemispheres 33.3
2559 Male, age 74, both hemispheres 12.1
Reticular pontine nucleus, oral
nTPM: 28.8
2012 Female, age 85, both hemispheres 35.6
1939 Male, age 80, both hemispheres 32.0
2366 Female, age 91, both hemispheres 29.5
2167 Male, age 76, both hemispheres 29.3
2361 Male, age 74, both hemispheres 17.6
Reticulotegmental nucleus
nTPM: 34.7
2322 Female, age 91, both hemispheres 43.1
2333 Male, age 80, both hemispheres 39.5
2325 Male, age 76, both hemispheres 29.9
2452 Male, age 74, both hemispheres 26.5
Spinal trigeminal nucleus, caudal
nTPM: 22.4
2447 Male, age 76, both hemispheres 30.1
2390 Female, age 91, both hemispheres 25.0
2642 Male, age 74, both hemispheres 21.6
2312 Male, age 61, both hemispheres 17.8
2308 Male, age 80, both hemispheres 17.5
Spinal trigeminal nucleus, interpolar
nTPM: 26.9
2625 Male, age 61, both hemispheres 43.0
2389 Female, age 91, both hemispheres 33.3
2033 Male, age 80, both hemispheres 23.6
2066 Male, age 76, right hemisphere 19.6
2386 Female, age 85, both hemispheres 15.1
Spinal trigeminal nucleus, oral
nTPM: 24.5
1978 Male, age 76, both hemispheres 31.2
2737 Female, age 85, both hemispheres 22.8
2164 Male, age 80, both hemispheres 19.6
Spinal vestibular nucleus
nTPM: 22.3
2796 Male, age 61, both hemispheres 31.9
2186 Female, age 91, both hemispheres 29.8
2780 Male, age 80, both hemispheres 21.0
2748 Male, age 76, both hemispheres 20.0
2384 Male, age 74, both hemispheres 16.2
2806 Female, age 85, both hemispheres 14.8
Subcoeruleus area
nTPM: 30.3
2369 Female, age 85, left hemisphere 41.2
2323 Female, age 91, left hemisphere 33.1
2089 Male, age 76, left hemisphere 30.9
1958 Male, age 80, both hemispheres 26.4
2451 Male, age 74, both hemispheres 20.0
Superior olive
nTPM: 28.4
2020 Male, age 76, both hemispheres 33.9
2561 Female, age 91, both hemispheres 30.5
1875 Female, age 85, both hemispheres 29.1
2329 Male, age 80, right hemisphere 24.8
2364 Male, age 74, right hemisphere 23.7
Superior vestibular nucleus
nTPM: 15.3
2061 Male, age 76, both hemispheres 20.2
2015 Male, age 80, both hemispheres 16.0
2383 Male, age 74, both hemispheres 9.8
Ventral medullary reticular nucleus
nTPM: 19.9
2060 Male, age 76, both hemispheres 20.2
2372 Male, age 61, both hemispheres 19.6
Ventral periolivary nuclei
nTPM: 27.0
2023 Male, age 76, both hemispheres 28.4
2130 Female, age 85, both hemispheres 27.8
2165 Male, age 80, both hemispheres 27.6
2794 Female, age 91, left hemisphere 24.2
Ventrolateral medulla, A1-C1 cell groups
nTPM: 19.7
1986 Male, age 76, both hemispheres 27.3
2302 Female, age 91, both hemispheres 26.6
2741 Female, age 85, both hemispheres 17.3
2180 Male, age 61, both hemispheres 14.8
2118 Male, age 80, both hemispheres 12.6
Ventrolateral tegmental area, A5 NE cell group
nTPM: 31.6
2456 Female, age 91, both hemispheres 37.8
1959 Male, age 76, both hemispheres 35.4
2449 Male, age 74, both hemispheres 32.3
2840 Female, age 85, both hemispheres 31.1
2359 Male, age 61, both hemispheres 29.1
2161 Male, age 80, both hemispheres 23.6

PONS AND MEDULLA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 57.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 33.0
FF:10182-103D2 60 years, female 33.2
FF:10165-103B3 76 years, female 32.8
Medulla oblongata
Scaled Tags Per Million: 23.0
FF:10038-101F2 18-64 years, mixed 30.2
FF:10174-103C3 60 years, female 19.5
FF:10155-103A2 76 years, female 19.2
Pons
Scaled Tags Per Million: 57.5
FF:10033-101E6 18-54 years, mixed 57.5

PONS AND MEDULLA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 90.7
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 82.2
Samples: 4

Max nTPM: 92.0
Min nTPM: 62.0
Sample A Female 86.0
Sample B Female 92.0
Sample C Male 88.6
Sample D Male 62.0
Pons
nTPM: 90.7
Samples: 4

Max nTPM: 116.5
Min nTPM: 66.4
Sample A Female 116.5
Sample B Female 66.4
Sample C Male 77.4
Sample D Male 102.6

PONS AND MEDULLA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 14.9
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 14.9
Samples: 4

Max nTPM: 15.7
Min nTPM: 13.8
Sample A Male 14.7
Sample B Male 13.8
Sample C Female 15.5
Sample D Female 15.7

PONS AND MEDULLA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 0.3
69608154 Antisense, RP_050426_03_F07, Mouse strain C57BL/6J (56 days, male) 0.3
Pons
Expression energy: 0.2
69608154 Antisense, RP_050426_03_F07, Mouse strain C57BL/6J (56 days, male) 0.2

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