MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:32.4 nTPM
HPA:32.4 nTPM
GTEx:43.3 nTPM
FANTOM5:34.6 Scaled Tags Per Million
Pig:31.0 nTPM
Mouse:13.1 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 32.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.2
2586 Male, age 75, left hemisphere 34.3
2666 Male, age 74, left hemisphere 32.6
2828 Female, age 72, unknown 32.5
2019 Male, age 18, unknown 31.4
2411 Female, age 72, unknown 31.3
1870 Female, age 42, unknown 30.5
1833 Male, age 53, unknown 30.0
1830 Male, age 51, unknown 29.8
1827 Male, age 72, unknown 29.6
2219 Male, age 76, both hemispheres 29.6
Dorsal raphe nucleus
nTPM: 31.6
2298 Female, age 72, unknown 32.4
2016 Female, age 72, unknown 32.1
2750 Male, age 76, both hemispheres 31.6
2047 Male, age 72, unknown 31.1
1828 Male, age 53, unknown 31.0
Inferior colliculus
nTPM: 29.0
1848 Female, age 42, unknown 29.6
1890 Male, age 53, unknown 29.2
2097 Female, age 72, unknown 29.1
2849 Male, age 72, unknown 28.3
Median raphe nucleus
nTPM: 27.8
2220 Male, age 76, midline 27.8
Pedunculopontine tegmental nucleus
nTPM: 30.9
2338 Male, age 61, both hemispheres 36.0
2334 Male, age 80, both hemispheres 30.3
1921 Female, age 85, both hemispheres 26.2
Periaquaductal grey, anterior
nTPM: 30.1
1795 Male, age 51, unknown 32.2
2502 Female, age 75, unknown 29.8
1947 Male, age 18, unknown 28.3
Periaquaductal grey, dorsal
nTPM: 29.0
1840 Male, age 53, unknown 29.7
1831 Male, age 72, unknown 29.2
2464 Female, age 72, unknown 28.7
2850 Male, age 76, both hemispheres 28.3
Periaquaductal grey, lateral
nTPM: 30.7
2272 Male, age 74, both hemispheres 34.0
2053 Male, age 18, unknown 29.4
2140 Male, age 76, both hemispheres 28.6
Pretectal area
nTPM: 30.1
2273 Male, age 74, both hemispheres 34.4
2224 Female, age 72, unknown 31.1
1817 Female, age 42, unknown 30.9
2007 Male, age 72, unknown 30.2
1815 Male, age 53, unknown 30.0
2407 Male, age 75, both hemispheres 29.6
2825 Male, age 18, unknown 29.5
2316 Male, age 76, right hemisphere 29.3
1816 Male, age 51, unknown 29.0
1944 Female, age 72, unknown 28.6
2667 Female, age 75, unknown 28.6
Red nucleus
nTPM: 31.6
2785 Male, age 18, unknown 33.8
1904 Male, age 53, unknown 33.7
2503 Female, age 72, unknown 33.5
2227 Male, age 72, unknown 32.8
2769 Male, age 72, unknown 32.8
1954 Female, age 42, unknown 32.0
1865 Male, age 51, unknown 31.5
1821 Female, age 72, unknown 30.7
2823 Male, age 76, right hemisphere 30.5
2584 Male, age 75, left hemisphere 30.4
2725 Female, age 75, unknown 29.8
2588 Male, age 74, left hemisphere 28.0
Substantia nigra
nTPM: 31.5
2590 Female, age 75, unknown 34.6
1916 Female, age 42, unknown 34.0
1851 Male, age 51, unknown 33.5
2583 Male, age 75, right hemisphere 33.2
2699 Male, age 18, unknown 32.4
2409 Female, age 72, unknown 30.0
2665 Male, age 74, both hemispheres 30.0
1941 Male, age 53, unknown 29.8
1889 Female, age 72, unknown 29.0
2241 Male, age 72, unknown 28.9
Superior colliculus
nTPM: 31.0
1995 Male, age 72, unknown 33.8
1913 Female, age 42, unknown 33.2
2664 Male, age 75, both hemispheres 32.8
2668 Female, age 75, unknown 31.6
1796 Male, age 53, unknown 31.4
2261 Male, age 18, unknown 31.1
2087 Female, age 72, unknown 29.9
2587 Male, age 74, left hemisphere 29.6
1839 Male, age 51, unknown 29.5
1895 Male, age 76, right hemisphere 26.7
Ventral tegmental area
nTPM: 32.4
1915 Female, age 42, unknown 32.8
2223 Female, age 72, unknown 32.7
2021 Male, age 53, unknown 32.4
1942 Male, age 51, unknown 32.2
2218 Male, age 76, both hemispheres 32.2
2410 Female, age 72, unknown 32.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 43.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.3
Samples: 139

Max nTPM: 92.6
Min nTPM: 19.7
Std nTPM: 13.3
Median nTPM: 41.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 92.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 89.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 84.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 74.4
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 71.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 71.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 69.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 67.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 67.0
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 65.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 65.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.6
FF:10158-103A5 76 years, female 34.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 31.0
Pig sample Sample description nTPM
Midbrain
nTPM: 30.0
Samples: 4

Max nTPM: 38.4
Min nTPM: 25.9
Sample A Female 38.4
Sample B Female 27.0
Sample C Male 28.6
Sample D Male 25.9
Periaqueductal gray
nTPM: 26.0
Samples: 3

Max nTPM: 28.4
Min nTPM: 24.5
Sample B Female 25.1
Sample C Male 28.4
Sample D Male 24.5
Substantia nigra
nTPM: 28.2
Samples: 4

Max nTPM: 33.2
Min nTPM: 25.9
Sample A Female 33.2
Sample B Female 26.1
Sample C Male 27.7
Sample D Male 25.9
Superior colliculi
nTPM: 31.0
Samples: 4

Max nTPM: 34.9
Min nTPM: 27.5
Sample A Female 34.9
Sample B Female 31.6
Sample C Male 30.1
Sample D Male 27.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.1
Samples: 4

Max nTPM: 15.4
Min nTPM: 12.0
Sample A Male 15.4
Sample B Male 12.3
Sample C Female 12.8
Sample D Female 12.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
70546354 Antisense, RP_050623_04_B04, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.