MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:28.3 nTPM
HPA:28.3 nTPM
GTEx:27.0 nTPM
FANTOM5:35.8 Scaled Tags Per Million
Pig:13.5 nTPM
Mouse:13.7 nTPM
Allen mouse:3.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.8
2586 Male, age 75, left hemisphere 42.3
2666 Male, age 74, left hemisphere 30.1
2828 Female, age 72, unknown 27.9
2219 Male, age 76, both hemispheres 24.7
1827 Male, age 72, unknown 23.5
2019 Male, age 18, unknown 22.0
1833 Male, age 53, unknown 21.0
1870 Female, age 42, unknown 20.3
1830 Male, age 51, unknown 19.7
2411 Female, age 72, unknown 16.8
Dorsal raphe nucleus
nTPM: 20.4
2298 Female, age 72, unknown 21.5
2016 Female, age 72, unknown 21.3
1828 Male, age 53, unknown 20.5
2047 Male, age 72, unknown 20.5
2750 Male, age 76, both hemispheres 18.2
Inferior colliculus
nTPM: 23.4
2849 Male, age 72, unknown 24.8
1890 Male, age 53, unknown 23.9
1848 Female, age 42, unknown 22.6
2097 Female, age 72, unknown 22.2
Median raphe nucleus
nTPM: 19.1
2220 Male, age 76, midline 19.1
Pedunculopontine tegmental nucleus
nTPM: 18.0
1921 Female, age 85, both hemispheres 20.4
2334 Male, age 80, both hemispheres 17.3
2338 Male, age 61, both hemispheres 16.2
Periaquaductal grey, anterior
nTPM: 28.3
2502 Female, age 75, unknown 29.2
1795 Male, age 51, unknown 28.5
1947 Male, age 18, unknown 27.1
Periaquaductal grey, dorsal
nTPM: 22.5
1831 Male, age 72, unknown 24.6
1840 Male, age 53, unknown 24.0
2464 Female, age 72, unknown 20.8
2850 Male, age 76, both hemispheres 20.4
Periaquaductal grey, lateral
nTPM: 21.7
2053 Male, age 18, unknown 23.4
2272 Male, age 74, both hemispheres 22.9
2140 Male, age 76, both hemispheres 18.7
Pretectal area
nTPM: 24.7
1816 Male, age 51, unknown 30.7
1944 Female, age 72, unknown 28.4
2007 Male, age 72, unknown 28.3
1815 Male, age 53, unknown 27.1
1817 Female, age 42, unknown 26.7
2407 Male, age 75, both hemispheres 26.6
2825 Male, age 18, unknown 23.8
2667 Female, age 75, unknown 22.4
2273 Male, age 74, both hemispheres 19.4
2316 Male, age 76, right hemisphere 19.3
2224 Female, age 72, unknown 18.8
Red nucleus
nTPM: 23.0
2584 Male, age 75, left hemisphere 30.1
2588 Male, age 74, left hemisphere 28.7
2785 Male, age 18, unknown 24.1
2769 Male, age 72, unknown 23.3
2227 Male, age 72, unknown 22.8
1904 Male, age 53, unknown 22.6
2823 Male, age 76, right hemisphere 21.6
2503 Female, age 72, unknown 21.4
1954 Female, age 42, unknown 21.2
1865 Male, age 51, unknown 21.1
2725 Female, age 75, unknown 20.7
1821 Female, age 72, unknown 18.0
Substantia nigra
nTPM: 22.5
2665 Male, age 74, both hemispheres 31.3
2583 Male, age 75, right hemisphere 27.4
1916 Female, age 42, unknown 24.8
1889 Female, age 72, unknown 23.9
1851 Male, age 51, unknown 23.5
2699 Male, age 18, unknown 23.0
2590 Female, age 75, unknown 21.8
1941 Male, age 53, unknown 19.6
2241 Male, age 72, unknown 15.8
2409 Female, age 72, unknown 14.3
Superior colliculus
nTPM: 25.8
2664 Male, age 75, both hemispheres 35.6
2668 Female, age 75, unknown 29.7
2087 Female, age 72, unknown 27.3
1796 Male, age 53, unknown 27.1
1995 Male, age 72, unknown 25.8
2261 Male, age 18, unknown 25.2
1913 Female, age 42, unknown 23.2
1839 Male, age 51, unknown 22.7
2587 Male, age 74, left hemisphere 20.9
1895 Male, age 76, right hemisphere 20.2
Ventral tegmental area
nTPM: 22.1
2218 Male, age 76, both hemispheres 24.5
1942 Male, age 51, unknown 24.2
2021 Male, age 53, unknown 22.0
1915 Female, age 42, unknown 21.6
2410 Female, age 72, unknown 20.5
2223 Female, age 72, unknown 19.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 27.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.0
Samples: 139

Max nTPM: 48.2
Min nTPM: 14.8
Std nTPM: 4.9
Median nTPM: 27.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 48.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 36.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 36.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 35.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 35.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 35.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 35.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 35.1
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 34.5
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 34.5
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 34.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 35.8
FF:10158-103A5 76 years, female 35.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.5
Pig sample Sample description nTPM
Midbrain
nTPM: 13.3
Samples: 4

Max nTPM: 16.5
Min nTPM: 9.4
Sample A Female 13.3
Sample B Female 9.4
Sample C Male 16.5
Sample D Male 14.0
Periaqueductal gray
nTPM: 12.7
Samples: 3

Max nTPM: 14.0
Min nTPM: 11.4
Sample B Female 11.4
Sample C Male 12.7
Sample D Male 14.0
Substantia nigra
nTPM: 12.2
Samples: 4

Max nTPM: 14.2
Min nTPM: 10.8
Sample A Female 12.1
Sample B Female 11.7
Sample C Male 14.2
Sample D Male 10.8
Superior colliculi
nTPM: 13.5
Samples: 4

Max nTPM: 14.2
Min nTPM: 12.4
Sample A Female 12.4
Sample B Female 14.2
Sample C Male 13.7
Sample D Male 13.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.7
Samples: 4

Max nTPM: 15.4
Min nTPM: 11.8
Sample A Male 15.4
Sample B Male 13.1
Sample C Female 11.8
Sample D Female 14.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.4
68799077 Antisense, RP_050217_02_A04, Mouse strain C57BL/6J (56 days, male) 3.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.