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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:19.6 nTPM
HPA:19.6 nTPM
GTEx:22.3 nTPM
FANTOM5:38.6 Scaled Tags Per Million
Pig:12.2 nTPM
Mouse:14.2 nTPM
Allen mouse:0.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 19.6
Sample id Sample description nTPM
Amygdala
nTPM: 19.5
2695 Female, age 67, right hemisphere 21.9
2514 Male, age 75, right hemisphere 20.5
1987 Female, age 91, left hemisphere 19.8
2814 Male, age 76, right hemisphere 19.7
2517 Female, age 94, left hemisphere 15.4
Basal amygdala
nTPM: 18.1
2827 Female, age 67, right hemisphere 21.2
2110 Male, age 80, left hemisphere 18.7
1955 Male, age 76, both hemispheres 17.5
2685 Female, age 94, left hemisphere 17.2
2243 Female, age 91, right hemisphere 17.1
2609 Male, age 75, right hemisphere 16.8
Central amygdala
nTPM: 19.1
2826 Female, age 94, left hemisphere 21.0
1905 Male, age 76, both hemispheres 20.2
2515 Male, age 75, right hemisphere 18.4
2239 Male, age 80, left hemisphere 18.1
2701 Female, age 91, right hemisphere 17.7
Corticomedial amygdala
nTPM: 17.8
2428 Male, age 75, right hemisphere 21.0
2535 Female, age 67, right hemisphere 19.3
2829 Male, age 80, left hemisphere 17.2
2429 Female, age 94, left hemisphere 16.6
2240 Male, age 76, both hemispheres 16.3
2242 Female, age 91, right hemisphere 16.2
Lateral amygdala
nTPM: 19.6
2830 Female, age 67, right hemisphere 24.5
2256 Male, age 80, left hemisphere 19.8
2534 Female, age 94, left hemisphere 19.8
2255 Female, age 91, right hemisphere 18.7
2516 Male, age 75, right hemisphere 17.6
1883 Male, age 76, both hemispheres 17.2
Stria terminalis, bed nucleus
nTPM: 15.3
2201 Male, age 74, unknown 16.9
1974 Female, age 91, both hemispheres 14.7
2486 Female, age 94, both hemispheres 14.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 22.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 22.3
Samples: 152

Max nTPM: 121.9
Min nTPM: 4.9
Std nTPM: 16.1
Median nTPM: 18.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 121.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 107.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 79.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 62.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 54.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 51.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 49.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 48.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 48.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 47.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 46.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 46.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 40.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 40.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 38.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 37.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 37.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 37.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 36.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 35.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 35.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 35.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 34.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 32.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 31.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 30.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 30.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 30.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 29.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 29.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 29.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 28.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 28.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 27.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 27.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 27.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 26.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 26.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 26.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 26.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 25.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 25.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 25.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 25.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 25.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 24.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 24.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 23.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 23.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 23.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 23.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 23.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 23.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 23.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 23.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 22.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 22.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 22.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 22.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 22.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 21.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 21.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 21.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 21.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 20.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 20.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 20.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 20.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 20.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 19.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 19.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 19.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 19.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 19.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 18.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 18.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 18.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 18.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 18.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 18.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 18.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 17.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 17.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 17.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 17.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 17.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 17.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 16.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 16.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 16.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 16.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 16.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 15.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 14.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 14.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 14.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 14.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 14.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 14.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 14.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 13.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 13.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 13.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 13.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 13.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 12.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 12.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 12.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 12.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 12.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 12.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 12.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 12.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 12.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 11.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 11.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 11.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 11.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 11.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 11.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 11.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 11.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 11.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 10.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 10.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 10.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 10.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 10.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 10.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 10.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 10.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 10.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 9.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 9.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 9.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 8.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 8.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 8.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 8.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 8.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 8.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 8.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 7.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 7.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 7.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 7.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 7.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 6.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 6.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 6.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 5.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 4.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 38.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 38.6
FF:10151-102I7 76 years, female 38.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 12.2
Pig sample Sample description nTPM
Amygdala
nTPM: 12.2
Samples: 4

Max nTPM: 16.1
Min nTPM: 8.4
Sample A Female 14.1
Sample B Female 16.1
Sample C Male 10.1
Sample D Male 8.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 14.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 14.2
Samples: 4

Max nTPM: 17.5
Min nTPM: 12.3
Sample A Male 12.3
Sample B Male 12.8
Sample C Female 17.5
Sample D Female 14.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.1
77791996 Antisense, RP_070208_04_C08, Mouse strain C57BL/6J (56 days, male) 0.2
67979031 Antisense, RP_040923_02_A12, Mouse strain C57BL/6J (56 days, male) 0.1

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