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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:97.9 nTPM
HPA:97.9 nTPM
GTEx:122.5 nTPM
FANTOM5:64.8 Scaled Tags Per Million
Pig:20.6 nTPM
Mouse:50.0 nTPM
Allen mouse:5.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 97.9
Sample id Sample description nTPM
Amygdala
nTPM: 97.3
2814 Male, age 76, right hemisphere 104.3
2695 Female, age 67, right hemisphere 99.0
2514 Male, age 75, right hemisphere 95.5
1987 Female, age 91, left hemisphere 94.5
2517 Female, age 94, left hemisphere 93.3
Basal amygdala
nTPM: 96.3
2609 Male, age 75, right hemisphere 99.0
1955 Male, age 76, both hemispheres 97.4
2243 Female, age 91, right hemisphere 97.2
2110 Male, age 80, left hemisphere 97.0
2685 Female, age 94, left hemisphere 95.7
2827 Female, age 67, right hemisphere 91.3
Central amygdala
nTPM: 97.0
2826 Female, age 94, left hemisphere 103.4
1905 Male, age 76, both hemispheres 98.0
2239 Male, age 80, left hemisphere 96.2
2515 Male, age 75, right hemisphere 95.6
2701 Female, age 91, right hemisphere 91.9
Corticomedial amygdala
nTPM: 95.3
2829 Male, age 80, left hemisphere 101.8
2428 Male, age 75, right hemisphere 97.2
2242 Female, age 91, right hemisphere 96.6
2429 Female, age 94, left hemisphere 93.2
2240 Male, age 76, both hemispheres 93.1
2535 Female, age 67, right hemisphere 90.1
Lateral amygdala
nTPM: 95.3
1883 Male, age 76, both hemispheres 102.8
2534 Female, age 94, left hemisphere 101.3
2516 Male, age 75, right hemisphere 96.1
2256 Male, age 80, left hemisphere 90.9
2255 Female, age 91, right hemisphere 90.7
2830 Female, age 67, right hemisphere 90.1
Stria terminalis, bed nucleus
nTPM: 97.9
1974 Female, age 91, both hemispheres 105.1
2486 Female, age 94, both hemispheres 97.4
2201 Male, age 74, unknown 91.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 122.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 122.5
Samples: 152

Max nTPM: 379.3
Min nTPM: 47.2
Std nTPM: 45.3
Median nTPM: 113.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 379.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 327.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 277.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 257.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 254.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 223.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 190.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 186.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 185.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 175.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 173.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 169.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 166.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 166.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 162.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 161.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 161.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 160.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 158.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 158.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 158.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 157.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 157.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 156.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 156.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 155.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 152.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 152.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 151.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 149.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 148.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 147.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 146.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 146.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 144.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 143.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 141.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 141.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 140.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 139.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 138.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 138.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 135.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 132.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 132.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 132.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 131.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 130.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 130.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 130.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 130.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 128.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 128.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 126.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 125.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 125.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 125.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 124.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 124.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 121.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 121.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 120.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 120.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 120.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 119.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 117.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 117.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 116.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 116.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 116.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 115.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 114.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 114.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 114.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 114.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 113.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 112.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 112.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 112.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 111.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 111.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 111.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 111.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 110.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 110.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 110.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 110.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 110.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 110.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 109.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 109.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 108.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 108.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 108.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 107.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 107.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 106.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 105.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 105.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 105.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 104.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 104.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 104.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 103.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 103.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 102.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 101.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 101.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 101.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 100.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 99.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 97.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 96.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 96.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 95.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 95.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 95.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 95.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 91.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 90.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 89.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 89.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 88.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 87.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 85.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 85.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 83.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 83.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 83.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 83.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 82.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 81.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 80.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 79.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 78.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 77.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 76.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 76.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 75.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 75.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 74.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 74.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 74.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 73.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 72.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 72.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 68.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 68.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 65.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 61.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 59.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 47.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 64.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 64.8
FF:10151-102I7 76 years, female 64.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 20.6
Pig sample Sample description nTPM
Amygdala
nTPM: 20.6
Samples: 4

Max nTPM: 29.2
Min nTPM: 15.4
Sample A Female 29.2
Sample B Female 19.9
Sample C Male 18.0
Sample D Male 15.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 50.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 50.0
Samples: 4

Max nTPM: 57.0
Min nTPM: 46.4
Sample A Male 48.1
Sample B Male 46.4
Sample C Female 57.0
Sample D Female 48.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 5.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.3
68637844 Antisense, RP_050126_01_G02, Mouse strain C57BL/6J (56 days, male) 5.3

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