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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:182.5 nTPM
HPA:182.5 nTPM
GTEx:179.7 nTPM
FANTOM5:213.3 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 182.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 179.2
2194 Female, age 79, both hemispheres 204.1
2565 Male, age 75, midline 192.7
1981 Female, age 72, midline 183.7
2816 Male, age 47, midline 176.2
2048 Male, age 55, midline 139.1
Cervical spinal cord, dorsal horn
nTPM: 171.0
2296 Male, age 66, both hemispheres 182.7
2069 Male, age 47, both hemispheres 179.9
2297 Male, age 75, both hemispheres 179.4
2173 Female, age 72, unknown 167.4
1877 Male, age 55, unknown 160.5
2721 Male, age 90, both hemispheres 156.5
Cervical spinal cord, ventral horn
nTPM: 182.5
2068 Male, age 55, unknown 226.9
2295 Male, age 66, both hemispheres 196.0
2480 Male, age 75, both hemispheres 176.7
2820 Female, age 79, both hemispheres 175.6
2809 Male, age 90, both hemispheres 165.1
2098 Female, age 72, unknown 155.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 179.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 179.7
Samples: 159

Max nTPM: 481.0
Min nTPM: 71.2
Std nTPM: 66.2
Median nTPM: 167.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 481.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 407.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 365.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 347.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 342.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 335.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 328.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 324.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 313.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 311.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 296.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 294.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 286.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 283.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 280.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 279.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 255.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 253.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 245.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 242.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 240.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 240.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 239.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 236.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 236.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 235.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 234.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 234.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 228.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 227.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 226.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 218.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 216.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 216.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 214.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 212.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 211.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 209.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 209.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 209.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 208.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 205.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 205.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 202.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 201.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 200.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 198.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 197.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 196.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 191.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 191.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 190.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 189.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 188.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 187.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 187.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 186.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 186.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 185.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 183.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 183.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 179.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 179.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 176.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 176.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 175.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 175.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 175.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 174.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 174.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 173.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 170.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 170.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 169.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 168.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 168.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 168.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 167.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 167.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 167.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 167.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 166.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 166.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 166.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 166.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 164.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 164.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 163.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 161.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 159.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 158.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 158.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 156.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 155.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 155.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 155.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 155.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 154.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 154.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 153.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 152.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 150.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 149.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 147.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 147.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 147.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 146.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 146.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 144.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 144.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 144.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 142.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 141.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 141.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 140.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 139.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 138.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 138.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 138.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 137.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 136.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 136.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 135.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 135.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 135.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 132.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 129.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 128.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 128.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 126.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 125.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 124.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 124.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 124.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 122.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 122.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 121.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 119.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 119.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 117.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 112.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 111.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 111.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 105.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 103.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 103.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 101.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 101.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 100.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 99.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 98.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 97.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 96.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 94.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 87.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 82.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 76.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 75.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 71.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 213.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 213.3
FF:10181-103D1 60 years, female 262.2
FF:10159-103A6 76 years, female 164.4

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