MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:301.7 nTPM
HPA:301.7 nTPM
GTEx:130.8 nTPM
FANTOM5:33.2 Scaled Tags Per Million
Pig:159.9 nTPM
Mouse:165.2 nTPM
Allen mouse:10.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 301.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 285.9
2586 Male, age 75, left hemisphere 343.6
2219 Male, age 76, both hemispheres 296.7
2019 Male, age 18, unknown 290.4
1827 Male, age 72, unknown 284.7
2828 Female, age 72, unknown 281.6
2666 Male, age 74, left hemisphere 278.6
2411 Female, age 72, unknown 274.4
1833 Male, age 53, unknown 271.3
1870 Female, age 42, unknown 269.2
1830 Male, age 51, unknown 268.7
Dorsal raphe nucleus
nTPM: 281.1
2298 Female, age 72, unknown 286.2
1828 Male, age 53, unknown 285.3
2047 Male, age 72, unknown 282.6
2016 Female, age 72, unknown 277.3
2750 Male, age 76, both hemispheres 274.1
Inferior colliculus
nTPM: 289.5
2097 Female, age 72, unknown 311.5
1890 Male, age 53, unknown 298.4
1848 Female, age 42, unknown 278.1
2849 Male, age 72, unknown 270.0
Median raphe nucleus
nTPM: 279.0
2220 Male, age 76, midline 279.0
Pedunculopontine tegmental nucleus
nTPM: 276.3
1921 Female, age 85, both hemispheres 288.5
2334 Male, age 80, both hemispheres 282.4
2338 Male, age 61, both hemispheres 257.8
Periaquaductal grey, anterior
nTPM: 293.6
1795 Male, age 51, unknown 312.6
2502 Female, age 75, unknown 288.6
1947 Male, age 18, unknown 279.6
Periaquaductal grey, dorsal
nTPM: 278.6
1831 Male, age 72, unknown 298.4
1840 Male, age 53, unknown 273.7
2464 Female, age 72, unknown 271.4
2850 Male, age 76, both hemispheres 271.0
Periaquaductal grey, lateral
nTPM: 276.0
2053 Male, age 18, unknown 282.6
2272 Male, age 74, both hemispheres 275.0
2140 Male, age 76, both hemispheres 270.4
Pretectal area
nTPM: 301.7
1816 Male, age 51, unknown 340.4
1944 Female, age 72, unknown 333.0
2667 Female, age 75, unknown 320.1
2007 Male, age 72, unknown 318.2
1817 Female, age 42, unknown 312.3
1815 Male, age 53, unknown 301.6
2224 Female, age 72, unknown 283.7
2273 Male, age 74, both hemispheres 280.8
2407 Male, age 75, both hemispheres 280.4
2825 Male, age 18, unknown 276.7
2316 Male, age 76, right hemisphere 271.2
Red nucleus
nTPM: 274.1
2785 Male, age 18, unknown 294.9
2584 Male, age 75, left hemisphere 285.4
2588 Male, age 74, left hemisphere 278.7
2725 Female, age 75, unknown 278.3
1821 Female, age 72, unknown 273.7
1954 Female, age 42, unknown 273.7
1904 Male, age 53, unknown 269.4
2503 Female, age 72, unknown 269.2
2227 Male, age 72, unknown 269.1
2769 Male, age 72, unknown 267.8
1865 Male, age 51, unknown 267.7
2823 Male, age 76, right hemisphere 261.9
Substantia nigra
nTPM: 299.6
2665 Male, age 74, both hemispheres 337.4
2583 Male, age 75, right hemisphere 315.0
1889 Female, age 72, unknown 303.1
1916 Female, age 42, unknown 301.4
1941 Male, age 53, unknown 301.0
1851 Male, age 51, unknown 295.4
2241 Male, age 72, unknown 293.7
2590 Female, age 75, unknown 293.6
2409 Female, age 72, unknown 280.9
2699 Male, age 18, unknown 274.4
Superior colliculus
nTPM: 290.0
2087 Female, age 72, unknown 312.0
2261 Male, age 18, unknown 310.6
2664 Male, age 75, both hemispheres 306.4
1796 Male, age 53, unknown 306.0
1995 Male, age 72, unknown 285.9
1913 Female, age 42, unknown 281.5
2587 Male, age 74, left hemisphere 277.7
1839 Male, age 51, unknown 274.6
2668 Female, age 75, unknown 274.0
1895 Male, age 76, right hemisphere 271.5
Ventral tegmental area
nTPM: 294.1
2223 Female, age 72, unknown 315.4
1942 Male, age 51, unknown 293.3
2218 Male, age 76, both hemispheres 293.1
2410 Female, age 72, unknown 292.7
1915 Female, age 42, unknown 289.1
2021 Male, age 53, unknown 281.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 130.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 130.8
Samples: 139

Max nTPM: 282.9
Min nTPM: 24.3
Std nTPM: 46.7
Median nTPM: 130.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 282.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 255.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 243.0
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 233.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 214.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 202.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 202.0
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 200.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 200.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 198.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 198.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.2
FF:10158-103A5 76 years, female 33.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 159.9
Pig sample Sample description nTPM
Midbrain
nTPM: 159.9
Samples: 4

Max nTPM: 278.4
Min nTPM: 66.7
Sample A Female 80.9
Sample B Female 66.7
Sample C Male 278.4
Sample D Male 213.5
Periaqueductal gray
nTPM: 57.2
Samples: 3

Max nTPM: 70.0
Min nTPM: 47.8
Sample B Female 53.7
Sample C Male 70.0
Sample D Male 47.8
Substantia nigra
nTPM: 107.2
Samples: 4

Max nTPM: 131.0
Min nTPM: 80.8
Sample A Female 131.0
Sample B Female 93.8
Sample C Male 123.2
Sample D Male 80.8
Superior colliculi
nTPM: 139.6
Samples: 4

Max nTPM: 199.5
Min nTPM: 95.8
Sample A Female 143.9
Sample B Female 95.8
Sample C Male 199.5
Sample D Male 119.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 165.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 165.2
Samples: 4

Max nTPM: 174.9
Min nTPM: 157.6
Sample A Male 166.9
Sample B Male 161.4
Sample C Female 174.9
Sample D Female 157.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.5
760 Antisense, RP_040324_01_F03, Mouse strain C57BL/6J (56 days, male) 10.5
761 Antisense, RP_040324_01_F03, Mouse strain C57BL/6J (56 days, male) 9.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.