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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:42.2 nTPM
HPA:42.2 nTPM
GTEx:53.6 nTPM
FANTOM5:199.5 Scaled Tags Per Million
Pig:54.7 nTPM
Mouse:293.6 nTPM
Allen mouse:21.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 42.2
Sample id Sample description nTPM
Amygdala
nTPM: 42.2
2514 Male, age 75, right hemisphere 49.2
2695 Female, age 67, right hemisphere 44.0
2517 Female, age 94, left hemisphere 41.4
2814 Male, age 76, right hemisphere 41.4
1987 Female, age 91, left hemisphere 35.0
Basal amygdala
nTPM: 35.9
2609 Male, age 75, right hemisphere 42.0
2685 Female, age 94, left hemisphere 38.8
2110 Male, age 80, left hemisphere 38.3
2827 Female, age 67, right hemisphere 32.6
1955 Male, age 76, both hemispheres 32.0
2243 Female, age 91, right hemisphere 31.7
Central amygdala
nTPM: 37.8
2826 Female, age 94, left hemisphere 44.1
2515 Male, age 75, right hemisphere 40.9
1905 Male, age 76, both hemispheres 37.6
2239 Male, age 80, left hemisphere 35.4
2701 Female, age 91, right hemisphere 31.1
Corticomedial amygdala
nTPM: 38.2
2429 Female, age 94, left hemisphere 46.1
2428 Male, age 75, right hemisphere 44.1
2829 Male, age 80, left hemisphere 42.9
2242 Female, age 91, right hemisphere 36.4
2240 Male, age 76, both hemispheres 34.9
2535 Female, age 67, right hemisphere 24.5
Lateral amygdala
nTPM: 37.2
2516 Male, age 75, right hemisphere 50.4
2534 Female, age 94, left hemisphere 39.9
1883 Male, age 76, both hemispheres 39.5
2830 Female, age 67, right hemisphere 37.8
2255 Female, age 91, right hemisphere 28.2
2256 Male, age 80, left hemisphere 27.1
Stria terminalis, bed nucleus
nTPM: 39.4
1974 Female, age 91, both hemispheres 46.7
2201 Male, age 74, unknown 37.4
2486 Female, age 94, both hemispheres 34.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 53.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 53.6
Samples: 152

Max nTPM: 113.1
Min nTPM: 16.7
Std nTPM: 18.6
Median nTPM: 51.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 113.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 104.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 104.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 103.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 98.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 92.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 90.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 90.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 89.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 88.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 87.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 85.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 84.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 82.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 80.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 78.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 77.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 77.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 76.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 75.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 75.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 74.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 72.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 72.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 71.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 71.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 70.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 69.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 69.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 67.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 66.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 65.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 65.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 65.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 64.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 64.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 64.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 64.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 63.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 63.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 62.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 62.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 62.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 61.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 61.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 61.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 61.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 61.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 60.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 60.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 59.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 59.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 58.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 58.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 57.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 57.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 56.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 56.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 55.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 55.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 55.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 54.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 54.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 54.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 53.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 52.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 52.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 52.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 52.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 52.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 52.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 52.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 52.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 52.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 52.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 51.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 50.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 50.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 49.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 49.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 49.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 48.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 48.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 48.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 48.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 48.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 48.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 47.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 47.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 47.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 46.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 46.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 46.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 46.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 45.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 45.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 44.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 44.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 44.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 44.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 44.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 44.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 44.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 44.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 43.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 43.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 42.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 42.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 41.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 41.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 40.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 40.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 40.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 40.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 40.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 38.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 37.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 37.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 37.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 37.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 37.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 37.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 36.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 35.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 35.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 35.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 34.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 34.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 34.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 34.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 34.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 33.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 33.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 33.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 33.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 33.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 33.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 33.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 32.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 31.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 31.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 31.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 30.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 30.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 29.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 27.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 27.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 27.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 27.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 22.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 22.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 16.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 199.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 199.5
FF:10151-102I7 76 years, female 199.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 54.7
Pig sample Sample description nTPM
Amygdala
nTPM: 54.7
Samples: 4

Max nTPM: 71.6
Min nTPM: 47.4
Sample A Female 71.6
Sample B Female 48.6
Sample C Male 47.4
Sample D Male 51.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 293.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 293.6
Samples: 4

Max nTPM: 333.4
Min nTPM: 261.3
Sample A Male 333.4
Sample B Male 291.2
Sample C Female 261.3
Sample D Female 288.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 21.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 21.3
70919698 Antisense, RP_050713_01_H06, Mouse strain C57BL/6J (56 days, male) 23.0
544899 Antisense, RP_040617_02_H01, Mouse strain C57BL/6J (56 days, male) 19.5

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